ontologies
EFO
Experimental Factor Ontology (EFO)
OWL
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Last submission date April 15, 2024
Summary
Classes
Properties
Instances
Notes
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General information

The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. EFO is developed by the EMBL-EBI Samples, Phenotypes and Ontologies Team (SPOT). We also add terms for external users when requested. See more...
Initial created on April 15, 2024. For additional information, contact Efo User List (efo-users@lists.sourceforge.net).

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FAIR score
Beta

Total score : 307.0 ( 64.0%)
See details

Submissions

Metrics

Identifiers

URI

http://www.ebi.ac.uk/efo/efo.owl
http://www.ebi.ac.uk/efo/efo.owl

Version IRI

http://www.ebi.ac.uk/efo/releases/v3.65.0/efo.owl
http://www.ebi.ac.uk/efo/releases/v3.65.0/efo.owl

Other identifier

https://doi.org/10.1093/bioinformatics/btq099
https://doi.org/10.1093/bioinformatics/btq099

Dates

Creation date

April 15, 2024

Submission date

April 15, 2024

Modification date

February 15, 2022

Persons and organizations

Contact

EFO User List

Creator

Laura Huerta Martinez
Zoe May Pendlington
Olamidipupo Ajigboye
Paola Roncaglia
Gautier Koscielny
Trish Whetzel

Contributor

Catherine Leroy
James Malone
Simon Jupp
Eleanor Williams
Ele Holloway
Emma Kate Hastings
Elen Parkinson
Dani Welter
Natalja Kurbatova
Drashtti Vasant
Jon Ison
Sirarat Sarntivijai
Tomasz Adamusiak

Publisher

http://www.ebi.ac.uk/

Endorsed by

RDA Wheat Data Interoperability Guidelines

Other links

Projects and usage information

Projects using EFO

Agrisemantics Map of Data Standards
Maggot
RDA Wheat Interoperability Working Group

Known usage

The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.

Methodology and provenance

Created with

OWL API

Community

Repository

https://github.com/EBISPOT/efo
https://github.com/EBISPOT/efo

Bug database

https://github.com/EBISPOT/efo/issues
https://github.com/EBISPOT/efo/issues

Notes

2024-04-15

Groups

Wheat Data Interoperability working group

Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Preferred namespace prefix

efo

Example of resource

http://www.orpha.net/ORDO/Orphanet_1390
http://www.orpha.net/ORDO/Orphanet_1390

Visits

Views of EFO

No views available for EFO.