Experimental Factor Ontology

Last uploaded: January 16, 2023
Details
Acronym EFO
Visibility Public
Description The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. EFO is developed by the EMBL-EBI Samples, Phenotypes and Ontologies Team (SPOT). We also add terms for external users when requested.
Status Production
Format OWL
Contact EFO User List, efo-users@lists.sourceforge.net
Additional Metadata
URIhttp://www.ebi.ac.uk/efo/efo.owl
bug Databasehttps://github.com/EBISPOT/efo/issues
copyright HolderEMBL - European Bioinformatics Institute
deprecatedfalse
endorsed ByRDA WDI (http://ist.blogs.inra.fr/wdi/)
endpoint
example Identifierhttp://www.orpha.net/ORDO/Orphanet_1390
ContributorsCatherine Leroy, Dani Welter, Drashtti Vasant, Ele Holloway, Eleanor Williams, Emma Kate Hastings, elen Parkinson, James Malone, Jon Ison, Natalja Kurbatova, Simon Jupp, Sirarat Sarntivijai, Tomasz Adamusiak
CreatorsOlamidipupo Ajigboye, Zoe May Pendlington, Gautier Koscielny, Trish Whetzel, Paola Roncaglia, Laura Huerta Martinez
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
has Licensewww.apache.org/licenses/LICENSE-2.0
Ontology Syntaxhttp://www.w3.org/ns/formats/RDF_XML
has Prior Versionhttp://data.agroportal.lirmm.fr/ontologies/EFO/submissions/51
identifierhttp://www.ebi.ac.uk/efo/efo.owl
is Of Typehttp://omv.ontoware.org/2005/05/ontology#UpperLevelOntology
known UsageThe scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.
mailing Listlocal:efo-users@ebi.ac.uk
Metadata vocabulary usedlocal:local
modification Date2022-02-15T00:00:00+00:00
more PermissionsCopyright [2014] EMBL - European Bioinformatics Institute Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
Natural Language
notes2023-01-16
preferred Namespace Prefixefo
publisherhttp://www.ebi.ac.uk/
Release date2023-01-16T18:03:28+01:00
repositoryhttps://github.com/EBISPOT/efo
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=EFO
use Guidelineshttps://www.ebi.ac.uk/about/terms-of-use
use Importslocal:local
used Ontology Engineering ToolOWL API
version3.50.0
Version IRIhttp://www.ebi.ac.uk/efo/releases/v3.50.0/efo.owl
Submissions
Version
Released
Modified
Uploaded
Downloads
3.50.0 (Parsed, Indexed, Metrics, Annotator) 01/16/2023 02/15/2022 01/16/2023 OWL | CSV | RDF/XML | DIFF
3.49.0 (Archived) 12/15/2022 02/15/2022 12/15/2022 OWL | DIFF
3.48.0 (Archived) 11/15/2022 02/15/2022 11/15/2022 OWL | DIFF
3.47.0 (Archived) 10/17/2022 02/15/2022 10/17/2022 OWL | DIFF
3.46.0 (Archived) 09/15/2022 02/15/2022 09/15/2022 OWL | DIFF
3.45.0 (Archived) 08/15/2022 02/15/2022 08/15/2022 OWL | DIFF
3.44.0 (Archived) 07/18/2022 02/15/2022 07/18/2022 OWL | DIFF
3.43.0 (Archived) 06/15/2022 02/15/2022 06/15/2022 OWL | DIFF
3.42.0 (Archived) 05/16/2022 02/15/2022 05/16/2022 OWL | DIFF
3.41.0 (Archived) 04/19/2022 02/15/2022 04/19/2022 OWL | DIFF
unknown (Archived) 10/31/2008 02/15/2022 02/18/2022 OWL | DIFF
3.9.0 (Archived) 06/17/2019 02/11/2022 OWL | DIFF
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unknown (Archived) 06/17/2019 07/04/2019 OWL | DIFF
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2.103 (Archived) 12/17/2018 12/17/2018 OWL | DIFF
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2.79 (Archived) 01/13/2017 01/13/2017 OWL | DIFF
2.79 (Archived) 12/21/2016 12/21/2016 OWL | DIFF
2.71 (Archived) 11/16/2016 11/16/2016 OWL | DIFF
2.71 (Archived) 10/19/2016 10/19/2016 OWL | DIFF
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2.71 (Archived) 05/30/2016 05/30/2016 OWL | DIFF
2.60 (Archived) 01/30/2016 01/30/2016 OWL
2.60 (Archived) 01/29/2016 01/29/2016 OWL
2.60 (Archived) 05/15/2015 06/23/2015 OWL
more...
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Total score : 312.0 ( 65.0% ) details
Metrics
Classes 40,316
Individuals 0
Properties 71
Maximum depth 20
Maximum number of children 5,567
Average number of children 7
Classes with a single child 2,395
Classes with more than 25 children 260
Classes with no definition 11,528
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