Select ontologies
Catalogue des produits phytopharmaceutiques et de leurs usages, des matières fertilisantes et des supports de culture autorisés en France (E-PHY)
Potato Ontology (CO_330)
Agronomy Ontology (AGRO)
Pigeon Pea Ontology (CO_341)
Meat Thesaurus (MEAT-T)
Semanticscience Integrated Ontology (SIO)
Rice Ontology (CO_320)
Environmental Biorefinery Ontology (EBO)
Relations Ontology (RO)
Agroecology Knowledge Management (GECO ontology) (GECO)
Sweet Potato Ontology (CO_331)
INIA Research Datasets (INIA-RDM)
Sustainable Development Goals Interface Ontology (SDGIO)
Wheat Ontology (CO_321)
SIREN (SIREN)
Feature Annotation Location Description Ontology (FALDO)
Experimental Factor Ontology (EFO)
Variation Ontology (VARIO)
Semantic Sensor Network Ontology (SSN)
Crop Vocabulary (CVO)
AGRORDF (AGRORDF)
FAO WCA Crop (WCACROPS)
The Extensible Observation Ontology (OBOE)
Fababean Ontology (CO_365)
Biorefinery (BIOREFINERY)
Maize Ontology (CO_322)
Food-Biomarker Ontology (FOBI)
Comparative Data Analysis Ontology (CDAO)
Banana Ontology (CO_325)
Aquatic Food Ontology (AQFO)
Protein Ontology (PR)
Soil Food Web Ontology (SFWO)
Brachiaria Ontology (CO_345)
AgronomicTaxon (ATC)
Banana Anatomy (CO_125)
Plant Trait Ontology (TO)
Process and Observation Ontology (PO2)
Biological Collections Ontology (BCO)
AnaEE Thesaurus (ANAEETHES)
EDAM bioinformatics operations, data types, formats, identifiers and topics (EDAM)
FoodOn (FOODON)
Common Bean Ontology (CO_335)
Wine Descriptors Ontology (FLAIR)
Barley Trait POLAPGEN Ontology (POLAPGEN_BARLEY)
Ontology of units of Measure (OM)
Compositional Dietary Nutrition Ontology (CDNO)
French Crop Usage (Classification des plantes cultivées en France en fonction des usages) (CROPUSAGE)
Vitis Ontology (CO_356)
Mungbean Ontology (CO_346)
Smart Applications REFerence ontology (SAREF)
XEML Environment Ontology (XEO)
Animal Disease Ontology (ANDO)
SAREF4AGRI: an extension of SAREF for the agriculture and food domain (SAREF4AGRI)
Solanaceae Phenotype Ontology (SPTO)
Bambara Groundnut Ontology (CO_366)
Livestock Product Trait Ontology (LPT)
Environment Ontology for Livestock (EOL)
Ontology for Food Processing Experiment (OFPE)
Agri-food vocabulary (AGFOOD)
Plant Experimental Assay Ontology (PEAO)
Crop Research Ontology (CO_715)
Barley Ontology (CO_323)
Thesaurus to define land management practices in agriculture and forestry for soil carbon storage (DATA4CPLUS)
OntoBiotope (ONTOBIOTOPE)
Linked Land Governance Thesaurus (LANDVOC)
agINFRA Soil Vocabulary (SOIL)
Multi-Crop Passport Ontology (CO_020)
Yam Ontology (CO_343)
Matter Transfer Ontology (TRANSMAT)
Gramene Taxonomy Ontology (GR-TAX)
Ontobiotope_Use (USE)
Environment Ontology (ENVO)
Biodiversity Thesaurus (BIODIVTHES)
Agri-Food Experiment Ontology (AFEO)
Cell Ontology (CL)
Beet Ontology (CO_333)
GEneral Multilingual Environmental Thesaurus (GEMET)
Wheat Taxa Gold Standard (WHEAT_TAX)
Phenotype And Trait Ontology (PATO)
Stratified lexicon of water related geophysical and textual data (LEXEAU)
Soybean Ontology (CO_336)
National Center for Biotechnology Information (NCBI) Organismal Classification (NCBITAXON)
Indicative Crop Classification (ICC)
Thesaurus for Animal Physiology and Livestock Systems (TRIPHASE)
Darwin-SW (DSW)
Terminology of French bread descriptors (ASCOPAIN-T)
Wheat Plant Anatomy and Development Ontology (CO_121)
Woody Plant Ontology (CO_357)
Soy Ontology (SOY)
Food Classification and Description System (FOODEX2)
Crop Planning and Production Process Ontology (C3PO)
Ontology of Experimental Events (OEEV)
Soil organic carbon storage and agricultural practices modeling (CSOPRA)
Castor Bean Ontology (CO_347)
Groundnut Ontology (CO_337)
Animal Health Ontology for Livestock (AHOL)
Vertebrate Trait Ontology (VT)
Ontology for Experimental Phenotypic Objects (OEPO)
Sorghum Ontology (CO_324)
Sensor, Observation, Sample, and Actuator Ontology (SOSA)
Durum Wheat (DURUM_WHEAT)
UMLS Semantic Network (STY)
Ontology for Meteorological Sensors (AWS)
Milk Microfiltration Ontology (MICROFILTRATION)
Genomic Feature and Variation Ontology (GFVO)
ASFA Thesaurus (ASFA)
Context-Aware System Ontology (CASO)
InfraRisk Ontology (INFRARISK)
Pearl Millet Ontology (CO_327)
AGROVOC (AGROVOC)
Cassava Ontology (CO_334)
Flora Phenotype Ontology (FLOPO)
Grapevine Anatomy Ontology (GAO)
CIQUAL (CIQUAL)
Unambiguous Characterization of Sensory Experiences Ontology (UC_SENSE)
Cotton Ontology (CO_358)
Agrontology (AGRONTOLOGY)
Ontology for the management of Wine Sensory analysis Descriptors (OWSD)
BBCH-based Plant Phenological Description Ontology (PPDO)
Agriculture and Forestry Ontology (AFO)
TAXREF-LD (TAXREF-LD)
Wheat Trait and Phenotype Ontology (WHEATPHENOTYPE)
Agroecology Thesaurus (THESAE)
Plant Phenotype Experiment Ontology (PPEO)
Plant Environment Ontology (EO)
Brassica Ontology (CO_348)
Agricultural Experiments Ontology (AEO)
Livestock Breed Ontology (LBO)
TransformON (TRANSFORMON)
Sunflower Ontology (CO_359)
DEMETER Agriculture Information Model (DEMETER-AIM)
Milk Oligosaccharide Thesaurus - HoloOLIGO project (MILKOLIGO)
Multi-scale Multi-step ontology (MS2O)
SAREF4ENVI: an extension of SAREF for the environment domain (SAREF4ENVI)
Global Agricultural Concept Scheme (GACS)
Chickpea Ontology (CO_338)
Apple Ontology (CO_370)
Common Greenhouse Ontology (CGO)
Lentil Ontology (CO_339)
Single-Nucleotide Polymorphism (SNP) Ontology (SNPO)
Plant Phenology Ontology (PPO)
Animal Trait Ontology for Livestock (ATOL)
BigDataGrapes Ontology (BDG)
Agricultural and Nutrition Technology Ontology (ANT)
Thesaurus of Plant Characteristics (TOP)
FOODIE Core Ontology (FOODIE)
Irrigation Ontology (IRRIG)
Oat Ontology (CO_350)
Population and Community Ontology (PCO)
Sequence Types and Features Ontology (SO)
Corine Land Cover Nomenclature (CLC)
Ontology for Nutritional Studies (ONS)
Gene Ontology (GO)
Basic Formal Ontology (BFO)
Cowpea Ontology (CO_340)
Crop Disease (CD)
Plant Experimental Conditions Ontology (PECO)
Sugar Kelp Ontology (CO_360)
Plant Ontology (PO)
Start typing to select ontologies or leave blank to use all
Select UMLS semantic types
Acquired Abnormality (T020)
Activity (T052)
Age Group (T100)
Amino Acid Sequence (T087)
Amino Acid, Peptide, or Protein (T116)
Amphibian (T011)
Anatomical Abnormality (T190)
Anatomical Structure (T017)
Animal (T008)
Antibiotic (T195)
Archaeon (T194)
Bacterium (T007)
Behavior (T053)
Biologic Function (T038)
Biologically Active Substance (T123)
Biomedical Occupation or Discipline (T091)
Biomedical or Dental Material (T122)
Bird (T012)
Body Location or Region (T029)
Body Part, Organ, or Organ Component (T023)
Body Space or Junction (T030)
Body Substance (T031)
Body System (T022)
Carbohydrate Sequence (T088)
Cell (T025)
Cell Component (T026)
Cell Function (T043)
Cell or Molecular Dysfunction (T049)
Chemical (T103)
Chemical Viewed Functionally (T120)
Chemical Viewed Structurally (T104)
Classification (T185)
Clinical Attribute (T201)
Clinical Drug (T200)
Conceptual Entity (T077)
Congenital Abnormality (T019)
Daily or Recreational Activity (T056)
Diagnostic Procedure (T060)
Disease or Syndrome (T047)
Drug Delivery Device (T203)
Educational Activity (T065)
Element, Ion, or Isotope (T196)
Embryonic Structure (T018)
Entity (T071)
Environmental Effect of Humans (T069)
Enzyme (T126)
Eukaryote (T204)
Event (T051)
Experimental Model of Disease (T050)
Family Group (T099)
Finding (T033)
Fish (T013)
Food (T168)
Fully Formed Anatomical Structure (T021)
Functional Concept (T169)
Fungus (T004)
Gene or Genome (T028)
Genetic Function (T045)
Geographic Area (T083)
Governmental or Regulatory Activity (T064)
Group (T096)
Group Attribute (T102)
Hazardous or Poisonous Substance (T131)
Health Care Activity (T058)
Health Care Related Organization (T093)
Hormone (T125)
Human (T016)
Human-caused Phenomenon or Process (T068)
Idea or Concept (T078)
Immunologic Factor (T129)
Indicator, Reagent, or Diagnostic Aid (T130)
Individual Behavior (T055)
Injury or Poisoning (T037)
Inorganic Chemical (T197)
Intellectual Product (T170)
Laboratory Procedure (T059)
Laboratory or Test Result (T034)
Language (T171)
Machine Activity (T066)
Mammal (T015)
Manufactured Object (T073)
Medical Device (T074)
Mental Process (T041)
Mental or Behavioral Dysfunction (T048)
Molecular Biology Research Technique (T063)
Molecular Function (T044)
Molecular Sequence (T085)
Natural Phenomenon or Process (T070)
Neoplastic Process (T191)
Nucleic Acid, Nucleoside, or Nucleotide (T114)
Nucleotide Sequence (T086)
Occupation or Discipline (T090)
Occupational Activity (T057)
Organ or Tissue Function (T042)
Organic Chemical (T109)
Organism (T001)
Organism Attribute (T032)
Organism Function (T040)
Organization (T092)
Pathologic Function (T046)
Patient or Disabled Group (T101)
Pharmacologic Substance (T121)
Phenomenon or Process (T067)
Physical Object (T072)
Physiologic Function (T039)
Plant (T002)
Population Group (T098)
Professional Society (T094)
Professional or Occupational Group (T097)
Qualitative Concept (T080)
Quantitative Concept (T081)
Receptor (T192)
Regulation or Law (T089)
Reptile (T014)
Research Activity (T062)
Research Device (T075)
Self-help or Relief Organization (T095)
Sign or Symptom (T184)
Social Behavior (T054)
Spatial Concept (T082)
Substance (T167)
Temporal Concept (T079)
Therapeutic or Preventive Procedure (T061)
Tissue (T024)
Vertebrate (T010)
Virus (T005)
Vitamin (T127)
Start typing to select UMLS semantic types or leave blank to use all
Select UMLS semantic groups
Activities & Behaviors (ACTI)
Anatomy (ANAT)
Chemicals & Drugs (CHEM)
Concepts & Ideas (CONC)
Devices (DEVI)
Disorders (DISO)
Genes & Molecular Sequences (GENE)
Geographic Areas (GEOG)
Living Beings (LIVB)
Objects (OBJC)
Occupations (OCCU)
Organizations (ORGA)
Phenomena (PHEN)
Physiology (PHYS)
Procedures (PROC)
Start typing to select UMLS semantic groups or leave blank to use all
Include ancestors up to level
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all
Include score
none
old
cvalue
cvalueh
Score annotations following the previous 2009 NCBO measure (old) or the C-Value measure (cvalue). If hierarchy expansion is used, then prefer cvalueh.
Filter by score threshold
Specify the minimum score value for annotations
Filter confidence threshold
Specify the minimum position in the scoring distribution (between 1 and 100)