Cell Ontology

Last uploaded: March 21, 2023
Details
Acronym CL
Visibility Public
Description An ontology of cell types.
Status Production
Format OWL
Contact Alex Diehl, addiehl@buffalo.edu
Categories Animal Science and Animal Products
Groups OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group
Additional Metadata
URIhttp://purl.obolibrary.org/obo/cl.owl
Alternative nameCell type ontology
bug Databasehttps://github.com/obophenotype/cell-ontology/issues
deprecatedfalse
endorsed ByRDA WDI (http://ist.blogs.inra.fr/wdi)
endpoint
example Identifierhttp://purl.obolibrary.org/obo/PR_000001889
Contributorshttps://orcid.org/0000-0002-9900-7880, https://orcid.org/0000-0003-1980-3228, https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0002-2244-7917, https://orcid.org/0000-0001-9990-8331, https://orcid.org/0000-0002-8688-6599, https://orcid.org/0000-0001-9114-8737, https://orcid.org/0000-0002-6601-2165, https://orcid.org/0000-0002-7073-9172
CreatorsChris Mungall, Nicole Vasilevsky, Melissa Haendel, Alan Ruttenberg, Jane Lomax, David Osumi-Sutherland
has Domainhttps://data.agroportal.lirmm.fr/categories/ANIMAL
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
has LicenseCreative Commons License
has Prior Versionhttp://data.agroportal.lirmm.fr/ontologies/CL/submissions/40
identifierhttp://doi.org/10.5281/zenodo.168254
is Format Ofhttp://purl.obolibrary.org/obo/cl.obo
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
keywordseukaryotes, cell biology, anatomy, molecular biology, chemical biology, molecular interactions, pathways and networks, proteins
known UsageOne of the main uses of the CL is to describe samples used in transcriptomic and functional genomics studies, such as FANTOM5, ENCODE and LINCS.
Metadata vocabulary usedlocal:local
Natural Language
notesSee PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo.
ontology Related Tolocal:local
preferred Namespace Prefixcl
Release date2023-03-21T18:01:17+01:00
repositoryhttps://github.com/obophenotype/cell-ontology
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=CL&require_exact_match=true&q=
used Ontology Engineering ToolOWL API
version2023-03-21
Version IRIhttp://purl.obolibrary.org/obo/cl/releases/2023-03-21/cl.owl
Submissions
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FAIR Scores beta
Total score : 323.0 ( 67.0% ) details
Metrics
Classes 15,996
Individuals 0
Properties 300
Maximum depth 31
Maximum number of children 2,971
Average number of children 4
Classes with a single child 2,064
Classes with more than 25 children 117
Classes with no definition 1,030
Visits
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Projects using CL

Agrisemantics Map of Data Standards

Agronomic Linked Data

Monarch Initiative

RDA Wheat Interoperability Working Group