Cell Ontology

Last uploaded: January 9, 2023

Details

Acronym	CL
Visibility	Public
Description	An ontology of cell types.
Status	Production
Format	OWL
Contact	Alex Diehl, addiehl@buffalo.edu
Categories	Animal Science and Animal Products
Groups	OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group

Additional Metadata

URI	http://purl.obolibrary.org/obo/cl.owl
Alternative name	Cell type ontology
bug Database	https://github.com/obophenotype/cell-ontology/issues
deprecated	false
endorsed By	RDA WDI (http://ist.blogs.inra.fr/wdi)
endpoint
example Identifier	http://purl.obolibrary.org/obo/PR_000001889
Contributors	https://orcid.org/0000-0002-9900-7880, https://orcid.org/0000-0003-1980-3228, https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0002-2244-7917, https://orcid.org/0000-0001-9990-8331, https://orcid.org/0000-0002-8688-6599, https://orcid.org/0000-0001-9114-8737, https://orcid.org/0000-0002-6601-2165, https://orcid.org/0000-0002-7073-9172
Creators	Chris Mungall, Nicole Vasilevsky, Melissa Haendel, Alan Ruttenberg, Jane Lomax, David Osumi-Sutherland
has Domain	https://data.agroportal.lirmm.fr/categories/ANIMAL
has Formality Level	http://w3id.org/nkos/nkostype#ontology
has License
has Prior Version	http://data.agroportal.lirmm.fr/ontologies/CL/submissions/37
identifier	http://doi.org/10.5281/zenodo.168254
is Format Of	http://purl.obolibrary.org/obo/cl.obo
is Of Type	http://omv.ontoware.org/2005/05/ontology#DomainOntology
keywords	eukaryotes, cell biology, anatomy, molecular biology, chemical biology, molecular interactions, pathways and networks, proteins
known Usage	One of the main uses of the CL is to describe samples used in transcriptomic and functional genomics studies, such as FANTOM5, ENCODE and LINCS.
Metadata vocabulary used	local:local
Natural Language
notes	See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo.
ontology Related To	local:local
preferred Namespace Prefix	cl
Release date	2023-01-09T00:00:00+00:00
repository	https://github.com/obophenotype/cell-ontology
URI Lookup Endpoint	http://data.agroportal.lirmm.fr/search?ontologies=CL&require_exact_match=true&q=
used Ontology Engineering Tool	OWL API
version	2023-01-09
Version IRI	http://purl.obolibrary.org/obo/cl/releases/2023-01-09/cl.owl

Version	Released	Uploaded	Downloads
2023-01-09 (Parsed, Indexed, Metrics, Annotator)	01/09/2023	01/09/2023	OWL \| CSV \| RDF/XML \| DIFF
2022-12-15 (Archived)	12/15/2022	12/15/2022	OWL \| DIFF
2022-11-25 (Archived)	11/28/2022	11/28/2022	OWL \| DIFF
2022-10-28 (Archived)	10/28/2022	10/28/2022	OWL \| DIFF
2022-09-15 (Archived)	09/15/2022	09/15/2022	OWL \| DIFF
2022-08-16 (Archived)	08/17/2022	08/17/2022	OWL \| DIFF
2022-06-18 (Archived)	06/18/2022	06/18/2022	OWL \| DIFF
2022-06-15 (Archived)	06/16/2022	06/16/2022	OWL \| DIFF
2022-02-16 (Archived)	02/17/2022	02/17/2022	OWL \| DIFF
2022-01-05 (Archived)	01/05/2022	01/05/2022	OWL \| DIFF
2021-12-16 (Archived)	12/18/2021	12/18/2021	OWL \| DIFF
2021-12-07 (Archived)	12/08/2021	12/08/2021	OWL \| DIFF
2021-11-25 (Archived)	11/26/2021	11/26/2021	OWL \| DIFF
2021-11-23 (Archived)	11/24/2021	11/24/2021	OWL \| DIFF
2021-09-09 (Archived)	09/10/2021	09/10/2021	OWL \| DIFF
2021-08-10 (Archived)	08/10/2021	08/10/2021	OWL \| DIFF
2021-06-29 (Archived)	06/29/2021	06/29/2021	OWL \| DIFF
2021-06-21 (Archived)	06/22/2021	06/22/2021	OWL \| DIFF
2021-04-22 (Archived)	04/23/2021	04/23/2021	OWL \| DIFF
2021-03-05 (Archived)	03/06/2021	03/06/2021	OWL \| DIFF
2021-02-01 (Archived)	02/01/2021	02/01/2021	OWL \| DIFF
2021-01-22 (Archived)	01/23/2021	01/23/2021	OWL \| DIFF
2020-11-11 (Archived)	11/18/2020	11/18/2020	OWL \| DIFF
2020-10-20 (Archived)	10/20/2020	10/20/2020	OWL \| DIFF
2020-10-02 (Archived)	10/04/2020	10/04/2020	OWL \| DIFF
2016-11-23 (Archived)	05/21/2020	05/21/2020	OWL \| DIFF
2016-11-23 (Archived)	03/03/2020	03/03/2020	OWL \| DIFF
2016-11-23 (Archived)	01/07/2020	01/07/2020	OWL \| DIFF
2016-11-23 (Archived)	08/12/2019	08/12/2019	OWL \| DIFF
2016-11-23 (Archived)	07/18/2019	07/18/2019	OWL \| DIFF
2016-11-23 (Archived)	05/06/2019	05/06/2019	OWL \| DIFF
2016-11-23 (Archived)	07/11/2018	07/11/2018	OWL \| DIFF
2016-11-23 (Archived)	12/12/2017	12/12/2017	OWL \| DIFF
2016-11-23 (Archived)	07/30/2017	07/30/2017	OWL \| DIFF
2016-11-23 (Archived)	04/16/2017	04/16/2017	OWL \| DIFF
2016-11-23 (Archived)	01/30/2017	01/25/2017	OWL
unknown (Archived)	01/24/2017	01/24/2017	OWL
unknown (Archived)	01/24/2017	01/24/2017	OWL
more...

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Go to the REST API JSON entry

Total score : 323.0 ( 67.0% ) details

Classes	17,147
Individuals	0
Properties	310
Maximum depth	31
Maximum number of children	3,132
Average number of children	4
Classes with a single child	2,521
Classes with more than 25 children	125
Classes with no definition	1,137

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