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Ontologies
CL
Cell Ontology (CL)
OWL
View license
Last submission date April 11, 2025
Summary
Classes
Properties
Instances
Notes
Mappings
Widgets
SPARQL

General information

An ontology of cell types.
Initial created on April 11, 2025. For additional information, contact Alex Diehl (addiehl@buffalo.edu).

Languages

Keywords and classes

eukaryotes
cell biology
anatomy
molecular biology
chemical biology
molecular interactions
pathways and networks
proteins

Categories and subjects

Anim
Animal
Svg Vector Icons : http://www.onlinewebfonts.com/icon
Export all metadata

Metrics

We have not yet calculated metrics for CL

FAIR score
Beta

Total score : 322.0 ( 67.0%)

Submissions

Identifiers

URI

http://purl.obolibrary.org/obo/cl.owl
http://purl.obolibrary.org/obo/cl.owl

Version IRI

http://purl.obolibrary.org/obo/cl/releases/2025-04-10/cl.owl
http://purl.obolibrary.org/obo/cl/releases/2025-04-10/cl.owl

Other identifier

http://doi.org/10.5281/zenodo.168254
http://doi.org/10.5281/zenodo.168254

AgroPortal URI

https://agroportal.lirmm.fr/ontologies/CL
https://agroportal.lirmm.fr/ontologies/CL

Dates

Creation date

April 11, 2025

Submission date

April 11, 2025

Persons and organizations

Contact

Alex Diehl

Creator

Alan Ruttenberg
David Osumi-Sutherland
Christopher Mungall
Jane Lomax
Nicole Vasilevsky
Melissa Haendel

Contributor

David Osumi-Sutherland
Christopher Mungall
Yvonne M. Bradford
Terrence Meehan
Nicole Vasilevsky
Ceri Van Slyke
Alexander Diehl
James Balhoff
Melissa Haendel
https://orcid.org/0000-0001-9114-8737
https://orcid.org/0000-0001-9990-8331
https://orcid.org/0000-0002-6601-2165
https://orcid.org/0000-0002-7073-9172
https://orcid.org/0000-0003-1980-3228
https://orcid.org/0000-0002-8688-6599
https://orcid.org/0000-0001-5208-3432
https://orcid.org/0000-0002-2244-7917
https://orcid.org/0000-0002-9900-7880

Endorsed by

RDA WDI

Other links

Projects and usage information

Projects using CL

Agrisemantics Map of Data Standards
Agronomic Linked Data
Monarch Initiative
RDA Wheat Interoperability Working Group

Known usage

One of the main uses of the CL is to describe samples used in transcriptomic and functional genomics studies, such as FANTOM5, ENCODE and LINCS.

Methodology and provenance

Created with

OWL API

Community

Repository

https://github.com/obophenotype/cell-ontology
https://github.com/obophenotype/cell-ontology

Bug database

https://github.com/obophenotype/cell-ontology/issues
https://github.com/obophenotype/cell-ontology/issues

Notes

See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo., See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, university at buffalo.

Groups

OBO Foundry
Wheat Data Interoperability working group

Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Identifier pattern

http://purl.obolibrary.org/obo/CL_[0-9]{7}
http://purl.obolibrary.org/obo/CL_[0-9]{7}

Preferred namespace URI

http://purl.obolibrary.org/obo/CL_
http://purl.obolibrary.org/obo/CL_

Preferred namespace prefix

cl

Example of resource

http://purl.obolibrary.org/obo/CL_0000000
http://purl.obolibrary.org/obo/CL_0000000

Visits

Views of CL

No views available for CL.
ID http://purl.obolibrary.org/obo/pr#has_constituent_monomer
http://purl.obolibrary.org/obo/pr#has_constituent_monomer
https://agroportal.lirmm.fr/ontologies/CL/has_constituent_monomer
Type http://www.w3.org/2002/07/owl#ObjectProperty

Raw data