Ontologies
VT
Vertebrate Trait Ontology (VT)
OWL
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Last submission date December 13, 2024
Summary
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General information

Abstract

Iowa State University, Mouse Genome Informatics, the Rat Genome Database, European Animal Disease Genomics Network of Excellence (EADGENE) and the French National Institute for Agricultural Research (INRA) have worked together to incorporate the Mammalian Phenotype (MP) ontology and the Animal Trait Ontology (ATO) to develop a Vertebrate Trait Ontology (VT), with emphasis on morphological, physiological and developmental traits in vertebrates. This project is aimed at enhancing the ability to standardize phenotype nomenclature across species. This will undoubtedly help the animal genome community by facilitating the transfer of genomics information from some well studied species. See more...

Description

The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms. See more...
Initial created on December 13, 2024. For additional information, contact Jim Reecy (jreecy@iastate.edu) and Cari Park (caripark@iastate.edu).

Languages

Categories and subjects

Pheno
Anim
Animal
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Metrics

FAIR score
Beta

Total score : 328.5 ( 68.0%)
See details

Ontology relations network

Submissions

Identifiers

URI

http://purl.obolibrary.org/obo/vt.owl
http://purl.obolibrary.org/obo/vt.owl

Version IRI

http://purl.obolibrary.org/obo/vt/releases/2024-12-12/vt.owl
http://purl.obolibrary.org/obo/vt/releases/2024-12-12/vt.owl

Other identifier

https://doi.org/10.1186/2041-1480-4-13
https://doi.org/10.1186/2041-1480-4-13

AgroPortal URI

https://agroportal.lirmm.fr/ontologies/VT
https://agroportal.lirmm.fr/ontologies/VT

Dates

Creation date

December 13, 2024

Submission date

December 13, 2024

Modification date

November 20, 2023

Persons and organizations

Contact

Jim Reecy
Cari Park

Other links

Projects and usage information

Methodology and provenance

Created with

OBO-Edit 2.3.1

Accrual periodicity

http://purl.org/cld/freq/monthly
http://purl.org/cld/freq/monthly

Community

Repository

https://github.com/AnimalGenome/vertebrate-trait-ontology
https://github.com/AnimalGenome/vertebrate-trait-ontology

Bug database

https://github.com/AnimalGenome/vertebrate-trait-ontology/issues
https://github.com/AnimalGenome/vertebrate-trait-ontology/issues

Groups

OBO Foundry
Consortium of Agricultural Biological Databases

Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Identifier pattern

http://purl.obolibrary.org/obo/VT_[0-9]{7}
http://purl.obolibrary.org/obo/VT_[0-9]{7}

Preferred namespace URI

http://purl.obolibrary.org/obo/VT_
http://purl.obolibrary.org/obo/VT_

Preferred namespace prefix

Trait.ontology

Example of resource

http://purl.obolibrary.org/obo/VT_1000047
http://purl.obolibrary.org/obo/VT_1000047

Metadata vocabulary used

oboinowl_gen

Visits

Views of VT

No views available for VT.