Variation Ontology

Last uploaded: May 27, 2021
Details
Acronym VARIO
Visibility Public
Description Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations. VariO allows unambiguous description of variation effects as well as computerized analyses over databases utilizing the ontology for annotation. VariO is a position specific ontology that can be used to describe effects of variations on DNA, RNA and/or protein level, whatever is appropriate.
Status Production
Format OWL
Contact Mauno Vihinen, mauno.vihinen@med.lu.se
Additional Metadata
URIhttp://purl.obolibrary.org/obo/vario.owl
deprecatedfalse
endorsed ByRDA WDI (http://ist.blogs.inra.fr/wdi/)
endpoint
example Identifierhttp://purl.obolibrary.org/obo/VariO_0117
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
Ontology Syntaxhttp://purl.obolibrary.org/obo/oboformat/spec.html
has Prior VersionVARIO/submissions/9
is Format Ofhttp://www.variationontology.org/vario_download/vario.obo
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
known UsageVariO allows : consistent naming, annotation of variation effects, data integration, comparison of variations and datasets, statistical studies, development of sofware tools.
Natural Language
preferred Namespace Prefixvario
preferred Namespace Urihttp://purl.obolibrary.org/obo/
Release date2021-05-27T18:06:56+02:00
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=VARIO&require_exact_match=true&q=
version2017-02-06
Version IRIhttp://purl.obolibrary.org/obo/vario/2017-02-06/vario.owl
Submissions
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Total score : 297.0 ( 62.0% ) details
Metrics
Classes 495
Individuals 0
Properties 22
Maximum depth 9
Maximum number of children 13
Average number of children 3
Classes with a single child 22
Classes with more than 25 children 0
Classes with no definition 4
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Projects using VARIO

Agrisemantics Map of Data Standards

RDA Wheat Interoperability Working Group