Plant Trait Ontology

Last uploaded: April 14, 2022
Details
Acronym TO
Visibility Public
Description An ontology that describes phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant.
Status Production
Format OWL
Contact Laurel Cooper, cooperl@science.oregonstate.edu
Pankaj Jaiswal, jaiswalp@science.oregonstate.edu
Categories Biodiversity and Ecology, Plant Phenotypes and Traits
Groups OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group
Additional Metadata
URIhttp://purl.obolibrary.org/obo/to.owl
bug Databasehttps://github.com/Planteome/plant-trait-ontology/issues
From the same domain thanhttp://data.agroportal.lirmm.fr/ontologies/EO, http://data.agroportal.lirmm.fr/ontologies/PO
deprecatedfalse
endorsed ByRDA WDI (http://ist.blogs.inra.fr/wdi/)
endpoint
example Identifierhttp://purl.obolibrary.org/obo/TO_0000064
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
has LicenseCreative Commons License
Ontology Syntaxhttp://purl.obolibrary.org/obo/oboformat/spec.html
has Prior Versionhttp://data.agroportal.lirmm.fr/ontologies/TO/submissions/13
identifierhttps://doi.org/10.1007/978-1-4939-3167-5_5
is Format Ofhttp://purl.obolibrary.org/obo/to.obo
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
keywordsphenotypic traits of plants
known UsageModeling Knowledge of Plant Traits and Phenotypes
Natural Language
ontology Related Tohttp://data.agroportal.lirmm.fr/ontologies/EO, http://data.agroportal.lirmm.fr/ontologies/GO, http://bioportal.bioontology.org/ontologies/CHEBI, http://data.agroportal.lirmm.fr/ontologies/PATO, http://data.agroportal.lirmm.fr/ontologies/PO, http://data.agroportal.lirmm.fr/ontologies/PR
preferred Namespace Prefixto
Release date2022-04-14T18:38:50+02:00
repositoryhttps://github.com/Planteome/plant-trait-ontology
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=TO&require_exact_match=true&q=
use Importshttp://purl.obolibrary.org/obo/to/imports/peco_import.owl, http://purl.obolibrary.org/obo/po/imports/ncbitaxon_import.owl, http://purl.obolibrary.org/obo/po/imports/ro_import.owl
used Ontology Engineering ToolOWL API
versionMarch 2018
Version IRIhttp://purl.obolibrary.org/obo/to/releases/2017-02-02/to.owl
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FAIR Scores beta
Total score : 326.0 ( 68.0% ) details
Metrics
Classes 5,262
Individuals 0
Properties 159
Maximum depth 32
Maximum number of children 155
Average number of children 3
Classes with a single child 914
Classes with more than 25 children 17
Classes with no definition 749
Visits
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Projects using TO

Agrisemantics Map of Data Standards

Agronomic Linked Data

Collaborative Open Plant Omics

Computational Biology Institute

Genome Database for Rosaceae

Hardwood Genomics Project

Legume Information System

Minimum Information About a Plant Phenotyping Experiment

PeanutBase

Planteome

RDA Wheat Interoperability Working Group

SoyBase and the Soybean Breeder's Toolbox

The Arabidopsis Information Resource

The Triticeae Toolbox