Soy Ontology

Last uploaded: December 12, 2020
Details
Acronym SOY
Visibility Public
Description Soybean Growth and Trait Ontology
Status Production
Format OBO
Contact Rex Nelson, rex.nelson@ars.usda.gov
Categories Plant Phenotypes and Traits
Groups Consortium of Agricultural Biological Databases
Additional Metadata
Alternative nameSoybase Ontology
bug Databasehttps://github.com/Planteome/soybase-ontology/issues
From the same domain thanCO_336
deprecatedfalse
endpoint
example IdentifierSOY:0000249
has Domainhttps://data.agroportal.lirmm.fr/categories/TRAITS
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
Ontology Syntaxhttp://purl.obolibrary.org/obo/oboformat/spec.html
has Prior Versionhttp://data.agroportal.lirmm.fr/ontologies/SOY/submissions/6
identifierhttp://purl.obolibrary.org/obo/TEMP
is Aligned ToPO, GO, TO, http://purl.obolibrary.org/obo/chebi.owl
is Of Typehttp://omv.ontoware.org/2005/05/ontology#ApplicationOntology
Metadata vocabulary usedlocal:local
modification Date2019-03-25T00:00:00+00:00
Natural Language
ontology Related ToGR-TAX
preferred Namespace PrefixSOY
Release date2020-07-20T00:00:00+00:00
repositoryhttps://github.com/Planteome/soybase-ontology
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=SOY&require_exact_match=true&q=
used Ontology Engineering ToolOBO-Edit 2.1.1-beta9
versionV10 revision 2.4
Submissions
Version
Released
Modified
Uploaded
Downloads
V10 revision 2.4 (Parsed, Indexed, Metrics, Annotator) 07/20/2020 03/25/2019 12/12/2020 OBO | CSV | RDF/XML | DIFF
V10 revision 1.4 (Archived) 07/20/2020 07/20/2020 OBO | DIFF
V10 revision 1.4 (Archived) 06/30/2020 06/30/2020 OBO | DIFF
V10 revision 1.4 (Archived) 06/12/2018 09/05/2018 OBO | DIFF
V10 revision 1.4 (Archived) 06/12/2018 06/12/2018 OBO
V10 revision 1.4 (Archived) 05/22/2017 06/08/2018 OBO
V10 revision 1.4 (Archived) 05/22/2017 05/22/2017 OBO
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FAIR Scores beta
Total score : 245.0 ( 51.0% ) details
Metrics
Classes 2,308
Individuals 0
Properties 1
Maximum depth 8
Maximum number of children 82
Average number of children 6
Classes with a single child 60
Classes with more than 25 children 9
Classes with no definition 24
Visits
includedInDataCatalog
Projects using SOY

Agrisemantics Map of Data Standards

Legume Information System

SoyBase and the Soybean Breeder's Toolbox