Acronym | SO |
Visibility | Public |
Description | A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases. |
Status | Production |
Format | OWL |
Contact | Barry Moore (Software Developer), barry.moore@genetics.utah.edu Colin Batchelor (for RNA related questions), colin@tantallon.org.uk Karen Eilbeck (PI), karen.eilbeck@genetics.utah.edu |
Categories | Plant Genetic Resources |
Groups | Consortium of Agricultural Biological Databases, OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group |
URI | http://purl.obolibrary.org/obo/so.owl |
bug Database | https://github.com/The-Sequence-Ontology/SO-Ontologies/issues |
deprecated | false |
endorsed By | RDA WDI (http://ist.blogs.inra.fr/wdi/) |
endpoint | ![]() |
example Identifier | http://purl.obolibrary.org/obo/SO_0001673 |
has Formality Level | http://w3id.org/nkos/nkostype#ontology |
Ontology Syntax | http://www.w3.org/ns/formats/RDF_XML |
has Prior Version | http://data.agroportal.lirmm.fr/ontologies/SO/submissions/98 |
is Format Of | http://purl.obolibrary.org/obo/so.obo |
is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
Natural Language | |
preferred Namespace Prefix | sequence |
Release date | 2023-02-18T18:39:20+01:00 |
repository | https://github.com/The-Sequence-Ontology/SO-Ontologies |
URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=SO&require_exact_match=true&q= |
used Ontology Engineering Tool | OBO-Edit 2.3.1 |
Version IRI | http://purl.obolibrary.org/obo/so/2021-11-22/so.owl |
No views of SO available
Classes | 2,729 |
Individuals | 0 |
Properties | 50 |
Maximum depth | 13 |
Maximum number of children | 45 |
Average number of children | 3 |
Classes with a single child | 131 |
Classes with more than 25 children | 7 |
Classes with no definition | 204 |