Sequence Types and Features Ontology

Last uploaded: September 8, 2023
Details
Acronym SO
Visibility Public
Description A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases.
Status Production
Format OWL
Contact Barry Moore (Software Developer), barry.moore@genetics.utah.edu
Colin Batchelor (for RNA related questions), colin@tantallon.org.uk
Karen Eilbeck (PI), karen.eilbeck@genetics.utah.edu
Categories Plant Genetic Resources
Groups Consortium of Agricultural Biological Databases, OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group
Additional Metadata
URIhttp://purl.obolibrary.org/obo/so.owl
bug Databasehttps://github.com/The-Sequence-Ontology/SO-Ontologies/issues
deprecatedfalse
endorsed ByRDA WDI (http://ist.blogs.inra.fr/wdi/)
endpoint
example Identifierhttp://purl.obolibrary.org/obo/SO_0001673
has Domainhttps://data.agroportal.lirmm.fr/categories/GENPLANT
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
Ontology Syntaxhttp://www.w3.org/ns/formats/RDF_XML
has Prior Versionhttp://data.agroportal.lirmm.fr/ontologies/SO/submissions/99
identifierhttp://purl.obolibrary.org/obo/so.owl
is Format Ofhttp://purl.obolibrary.org/obo/so.obo
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
Natural Language
preferred Namespace Prefixsequence
preferred Namespace Urihttp://purl.obolibrary.org/obo/
Release date2023-09-08T18:13:43+02:00
repositoryhttps://github.com/The-Sequence-Ontology/SO-Ontologies
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=SO&require_exact_match=true&q=
used Ontology Engineering ToolOBO-Edit 2.3.1
Version IRIhttp://purl.obolibrary.org/obo/so/2021-11-22/so.owl
Submissions
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Total score : 305.0 ( 63.0% ) details
Metrics
Classes 2,729
Individuals 0
Properties 50
Maximum depth 13
Maximum number of children 45
Average number of children 3
Classes with a single child 131
Classes with more than 25 children 7
Classes with no definition 204
Visits
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Projects using SO

Agrisemantics Map of Data Standards

Agronomic Linked Data

Computational Biology Institute

Dictybase

Genome Database for Rosaceae

Hardwood Genomics Project

i5k Workspace@NAL

Legume Information System

Monarch Initiative

PeanutBase

RDA Wheat Interoperability Working Group

SoyBase and the Soybean Breeder's Toolbox

The Triticeae Toolbox