ontologies
SNPO
Single-Nucleotide Polymorphism (SNP) Ontology (SNPO)
OWL
No license
Last submission date March 14, 2017
Summary
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General information

SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels. See more...
Initial created on August 1, 2006. For additional information, contact Adrien Coulet (adrien.coulet@loria.fr).

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Total score : 270.0 ( 56.0%)
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Identifiers

URI

http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl

Dates

Creation date

August 1, 2006

Submission date

March 14, 2017

Persons and organizations

Contact

Adrien Coulet

Creator

Adrien Coulet

Contributor

Amedeo Napoli
Marie-Dominique Devignes
Malika Smaïl-Tabbone
Pascale Benlian

Publisher

LORIA (www.loria.fr/)

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Projects and usage information

Methodology and provenance

The fields Knowledge representation paradigm, Engineering methodology, Created with, Accrual method, Accrual periodicity... are empty

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Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Preferred namespace URI

http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#

Preferred namespace prefix

snpo

Example of resource

http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#haplotype
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#haplotype

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