| URI | http://purl.obolibrary.org/obo/pr.owl |
| abstract | The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates to UniProtKB in that PRO's organism-specific classes of proteins encoded by a specific gene correspond to entities documented in UniProtKB entries. PRO relates to the GO in that PRO's representations of organism-specific protein complexes are subclasses of the organism-agnostic protein complex terms in the GO Cellular Component Ontology. The past few years have seen growth and changes to the PRO, as well as new points of access to the data and new applications of PRO in immunology and proteomics. Here we describe some of these developments. |
| copyright Holder | PRO Consortium (http://proconsortium.org/) |
| deprecated | false |
| endorsed By | RDA WDI (http://ist.blogs.inra.fr/wdi/) |
| endpoint | http://pir.georgetown.edu/pro/pro_sparql.shtml |
| example Identifier | http://purl.obolibrary.org/obo/PR_000018263 |
| funded By | NIH, NIGMS, NHGRI, NIAID, NSF, Computercraft Corporation, NCI, US Air Force, NLM |
| Contributors | PIR (http://proconsortium.org/pirwww/about/staff.shtml), Cathy H. Wu, Cecilia Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Raja Mazumder, Peter McGarvey, Karen Ross, Baris Suzek, Sona Vasudevan, C.R. Vinayaka, Qinghua Wang, Yuqi M. Wang, Lai-Su L. Yeh, Jian Zhang |
| Creators | Darren A. Natale |
| has Formality Level | http://w3id.org/nkos/nkostype#ontology |
| has Format | http://purl.obolibrary.org/obo/pr.obo |
| has License |  |
| Ontology Syntax | http://www.w3.org/ns/formats/RDF_XML |
| has Prior Version | http://data.agroportal.lirmm.fr/ontologies/PR/submissions/3 |
| is Format Of | http://purl.obolibrary.org/obo/pr.owl |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
| key Classes | gene, protein, organism, protein_coding_gene |
| keywords | protein ,amino acids, genes, proteomics, immunology, uniprot knowledgebase |
| more Permissions | The PRotein Ontology is licensed under CC BY 4.0. You are free to share (copy and redistribute the material in any medium or format) and adapt (remix, transform, and build upon the material) for any purpose, even commercially. You must give appropriate credit (by using the original ontology IRI for the whole ontology or original term IRIs for individual terms), provide a link to the license, and indicate if any changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. |
| Natural Language | |
| notes | The PRotein Ontology is licensed under CC BY 4.0. Please see http://obofoundry.org/ontology/pr for details., Use reasoner in OBO Edit to see the correct hierarchy. |
| ontology Related To | http://purl.obolibrary.org/obo/doid.owl, http://agroportal.lirmm.fr/ontologies/GO, http://agroportal.lirmm.fr/ontologies/SO |
| preferred Namespace Prefix | pr |
| preferred Namespace Uri | http://purl.obolibrary.org/obo/ |
| publisher | PRO Consortium (http://proconsortium.org/) |
| Release date | 2018-05-16T00:00:00+00:00 |
| repository | https://sourceforge.net/projects/pro-obo/ |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=PR&require_exact_match=true&q= |
| URI Regex Pattern | http://purl.obolibrary.org/obo/PR_ |
| used Ontology Engineering Tool | PRO dB |
| version | 56.0 |
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