Plant Experimental Assay Ontology

Last uploaded: June 30, 2020
Details
Acronym PEAO
Visibility Public
Description The Plant domain has been the subject of several attempts to structure and formally define terms and corresponding relations, such as their anatomical features, developmental stages, and the application of particular experimental procedures to a biological problem. However, a focus on experimental assays in order to describe the whole experimental procedure, to the best of our knowledge, has only been attempted in the context of a very general description based on classical views of the scientific method. In this study, we focus on the development and proposal of an ontology dedicated to the description of these experimental procedures, regardless of the scientific questions that prompted the assays. This ontology includes entities from three distinct realms (biological, physical and data), which include both experimental products, their relations and the protocols describing their manipulation.
Status Production
Format OWL
Contact PEAO Team, peaoteam@gmail.com
Categories Plant Anatomy and Development
Groups Rice Data Interoperability working group
Additional Metadata
URIhttps://bitbucket.org/PlantExpAssay/ontology/raw/v0.1/PlantExperimentalAssayOntology.owl
bug Databasehttps://bitbucket.org/PlantExpAssay/ontology/issues
deprecatedfalse
endpoint
example Identifierhttp://purl.obolibrary.org/obo/EO_0007263
ContributorsInês Chaves, Daniel Faria, Pedro T. Monteiro, Nuno D. Mendes, Cátia Vaz
Ontology Syntaxhttp://www.w3.org/ns/formats/OWL_XML
has Prior VersionPEAO/submissions/1
known UsageThe final outcome is a useful and comprehensive ontology in the plant domain, that will be useful for data integration and querying heterogeneous data.
modification Date2019-08-02T00:00:00+00:00
Natural Language
notesThis ontology provide the means to efficiently gather information concerning plant experimental assays and elicit the extraction of relevant information. The representation of the data using this specifically designed for a Plant Experimental Assays (PEAO) enables the preservation of the semantic relationships between the entities represented therein, which facilitates the interpretation of the results and the integration of data produced by different experiments. Moreover, the workflow established in PEAO supports the management of all the gathered data and the disperse information.
preferred Namespace Prefixpeao
Release date2019-08-02T18:04:26+02:00
repositoryhttps://bitbucket.org/PlantExpAssay/ontology/src/
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=PEAO&require_exact_match=true&q=
used Ontology Engineering ToolOWL API
Submissions
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Total score : 273.0 ( 57.0% ) details
Metrics
Classes 2,298
Individuals 1
Properties 74
Maximum depth 9
Maximum number of children 75
Average number of children 4
Classes with a single child 140
Classes with more than 25 children 11
Classes with no definition 2,221
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Agrisemantics Map of Data Standards