Phenotype And Trait Ontology

Last uploaded: May 18, 2023
Details
Acronym PATO
Visibility Public
Description An ontology of phenotypic qualities (properties, attributes or characteristics).
Status Production
Format OWL
Contact George Gkoutos, geg18@aber.ac.uk
Categories Biodiversity and Ecology, Plant Phenotypes and Traits
Groups Consortium of Agricultural Biological Databases, OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group
Additional Metadata
URIhttp://purl.obolibrary.org/obo/pato.owl
Alternative namePhenotypic Quality Ontology
bug Databasehttps://github.com/pato-ontology/pato/issues
deprecatedfalse
endorsed ByRDA WDI (http://ist.blogs.inra.fr/wdi/)
endpoint
example Identifierhttp://purl.obolibrary.org/obo/PATO_0001464
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
has LicenseCreative Commons License
Ontology Syntaxhttp://www.w3.org/ns/formats/RDF_XML
has Prior Versionhttp://data.agroportal.lirmm.fr/ontologies/PATO/submissions/39
identifierhttps://doi.org/10.1016/j.tree.2007.03.013
is Format Ofhttp://purl.obolibrary.org/obo/pato.obo
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
Natural Language
ontology Related Tohttp://data.agroportal.lirmm.fr/ontologies/ENVO, http://data.agroportal.lirmm.fr/ontologies/CL
preferred Namespace Prefixquality
Release date2023-05-18T18:38:08+02:00
repositoryhttps://github.com/pato-ontology/pato/
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=PATO&require_exact_match=true&q=
used Byhttp://data.agroportal.lirmm.fr/ontologies/ENVO, http://data.agroportal.lirmm.fr/ontologies/TOP, http://data.agroportal.lirmm.fr/ontologies/CL
used Ontology Engineering Toolhttp://oboedit.org/
version2023-05-18
Version IRIhttp://purl.obolibrary.org/obo/pato/releases/2023-05-18/pato.owl
Submissions
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FAIR Scores beta
Total score : 335.0 ( 70.0% ) details
Metrics
Classes 10,589
Individuals 0
Properties 309
Maximum depth 18
Maximum number of children 1,822
Average number of children 3
Classes with a single child 1,693
Classes with more than 25 children 70
Classes with no definition 1,421
Visits
includedInDataCatalog
Projects using PATO

Agrisemantics Map of Data Standards

Agronomic Linked Data

Computational Biology Institute

Dictybase

Hardwood Genomics Project

Monarch Initiative

Planteome

RDA Wheat Interoperability Working Group

The Arabidopsis Information Resource