ontologies
MILKOLIGO
Milk Oligosaccharide Thesaurus - HoloOLIGO project (MILKOLIGO)
SKOS
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Last submission date October 18, 2023
Summary
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General information

Abstract

MilkOligoThesaurus contains the names, synonyms, abbreviations and abbreviated IUPAC condensed chemical form of 245 MOs collected from selected key articles on mammalian milk analyses. When available each unique MO molecule is linked to its ID from the NCBI PubChem and ChEBI databases. The DOI of sources of the collected information is provided. See more...

Description

This thesaurus gathers milk oligosaccharide synonyms., This dataset is a thesaurus gathering milk oligosaccharide synonyms See more...
Initial created on July 12, 2023. For additional information, contact Sylvie Combes (sylvie.combes@inrae.fr).

Languages

Keywords and classes

mammals; milk; oligosaccharide; glycan;

Categories and subjects

Animal Science and Animal Products
Food and Human Nutrition
Food and Human Nutrition
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FAIR score
Beta

Total score : 305.0 ( 63.0%)
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Ontology relations network

Submissions

Metrics

We have not yet calculated metrics for MILKOLIGO

Identifiers

URI

http://opendata.inrae.fr/holooligo/
http://opendata.inrae.fr/holooligo/

Version IRI

http://opendata.inrae.fr/holooligo/2.0
http://opendata.inrae.fr/holooligo/2.0

Other identifier

https://doi.org/10.57745/RA5DAC
https://doi.org/10.57745/RA5DAC

AgroPortal URI

https://agroportal.lirmm.fr/ontologies/MILKOLIGO
https://agroportal.lirmm.fr/ontologies/MILKOLIGO

Dates

Creation date

July 12, 2023

Submission date

October 18, 2023

Modification date

December 22, 2023

Persons and organizations

Contact

Sylvie Combes

Creator

Mathilde Rumeau
Sylvie Combes
Christelle Knudsen

Contributor

Sophie Aubin
Agnès Girard

Curator

Sylvie Combes

Funded or sponsored by

INRAE metaprogramme HoloFLUX
INRAE - National Research Institute for Agriculture, Food and the Environment

Other links

Projects and usage information

Projects using MILKOLIGO

No projects using MILKOLIGO

Known usage

The first purpose of the thesaurus is to be used for text mining: in order to gain knowledge on the role of MOs it is necessary to find, visualize and analyze MO patterns that are scattered in thousands of scientific papers.In order to automatically extract these data from the literature, making a thesaurus available to normalize MO entities is an essential step. Thus, MilkOligoThesaurus contains standardized names and harmonized terminology for different MO structures, ensuring consistency and facilitating data exchange and integration.

Designed for task (as defined by OMV).

http://omv.ontoware.org/2005/05/ontology#AnnotationTask
http://omv.ontoware.org/2005/05/ontology#AnnotationTask

Subject

https://agroportal.lirmm.fr/categories/ANIMAL, https://data.agroportal.lirmm.fr/categories/NUTRITION
NUTRITION

Coverage

N/A

Methodology and provenance

Engineering methodology

SKOS Play!

Created with

other

Competency question

- List the most commonly identified MOs by analyzing selected reference scientific articles- Propose a consensus name for the normalization of MOs heterogenous names found in the selected articles and in the chemical databases, or the MOs without names- Index MO synonyms

Was generated by

Mathilde Rumeau

Community

Audience

Research community in Lifesciences

Groups

National research institute for agriculture, food and the environment

Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Identifier pattern

http://opendata.inrae.fr/holooligo/oligo_[0-9]+
http://opendata.inrae.fr/holooligo/oligo_[0-9]+

Preferred namespace URI

http://opendata.inrae.fr/holooligo/
http://opendata.inrae.fr/holooligo/

Preferred namespace prefix

ho

Example of resource

http://opendata.inrae.fr/holooligo/oligo_165
http://opendata.inrae.fr/holooligo/oligo_165

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