| URI | http://opendata.inrae.fr/holooligo/ |
| abstract | MilkOligoThesaurus includes the names, synonyms, abbreviations and abbreviated IUPAC condensed chemical form of 245 MOs collected from key selected articles on mammalian milk analyses. Each unique MO molecule is linked to its ID from the NCBI PubChem and ChEBI databases. The DOI of sources of the collected information is provided. |
| audience | Research community in Lifesciences |
| competency Question | - List the most commonly identified MOs by analyzing selected reference scientific articles
- Propose a consensus name for the normalization of MOs heterogenous names found in the selected articles and in the chemical databases, or the MOs without names
- Index MO synonyms |
| coverage | N/A |
| curated By | Sylvie Combes |
| deprecated | false |
| designed For Ontology Task | http://omv.ontoware.org/2005/05/ontology#AnnotationTask |
| endpoint | http://ts.opendata.inrae.fr/sparql/ |
| example Identifier | http://opendata.inrae.fr/holooligo/oligo_165 |
| funded By | https://ror.org/003vg9w96, INRAE metaprogramme HoloFLUX |
| Contributors | https://orcid.org/0000-0003-4805-8220, https://orcid.org/0009-0003-1840-584X |
| Creators | Mathilde Rumeau |
| has Domain | https://data.agroportal.lirmm.fr/categories/ANIMAL, https://data.agroportal.lirmm.fr/categories/NUTRITION |
| has Formality Level | http://w3id.org/nkos/nkostype#thesaurus |
| has Format | https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/BN0FFA&version=1.0 |
| has License | https://spdx.org/licenses/etalab-2.0.html |
| Ontology Syntax | http://www.w3.org/ns/formats/RDF_XML |
| has Prior Version | http://data.agroportal.lirmm.fr/ontologies/MILKOLIGO/submissions/1 |
| identifier | https://doi.org/10.57745/RA5DAC |
| is Aligned To | https://pubchem.ncbi.nlm.nih.gov/, https://www.ebi.ac.uk/chebi/ |
| is Format Of | https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/GLM8FW&version=1.0 |
| is Of Type | other |
| keywords | mammals; milk; oligosaccharide; glycan; |
| known Usage | The first purpose of the thesaurus is to be used for text mining: in order to gain knowledge on the role of MOs it is necessary to find, visualize and analyze MO patterns that are scattered in thousands of scientific papers.In order to automatically extract these data from the literature, making a thesaurus available to normalize MO entities is an essential step. Thus, MilkOligoThesaurus contains standardized names and harmonized terminology for different MO structures, ensuring consistency and facilitating data exchange and integration. |
| Metadata vocabulary used | http://www.isibang.ac.in/ns/mod |
| more Permissions | https://creativecommons.org/licenses/by/4.0/ |
| Natural Language | |
| number Of Axioms | 0 |
| preferred Namespace Prefix | ho |
| preferred Namespace Uri | http://opendata.inrae.fr/holooligo/ |
| publisher | https://ror.org/003vg9w96 |
| Release date | 2023-07-12T00:00:00+00:00 |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=MILKOLIGO&require_exact_match=true&q= |
| URI Regex Pattern | http://opendata.inrae.fr/holooligo/oligo_[0-9]+ |
| use Imports | http://www.w3.org/2004/02/skos/core# |
| used Ontology Engineering Methodology | SKOS Play! |
| used Ontology Engineering Tool | other |
| version | 1.0 |
| Version IRI | http://opendata.inrae.fr/holooligo/1.0 |
| was Generated By | Mathilde Rumeau |