Gramene Taxonomy Ontology

Last uploaded: June 30, 2015
Details
Acronym GR-TAX
Visibility Public
Description It is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class or any rank in the classification. Primarily derived from NCBI Taxonomy, the revisions were made as and when/where required in the rankings. The rank of genome types was added by this project. This taxonomy ontology focuses on the Poaceae (Gramineae) family of plant taxonomy only.
Status Retired
Format OBO
Contact Gramene, gramene@gramene.org
Categories Taxonomic Classifications of Organisms
Groups Agronomic Linked Data
Additional Metadata
deprecatedtrue
endpointlocal:local
example Identifierhttp://purl.obolibrary.org/obo/GR_tax_079425
has Formality Levelhttp://w3id.org/nkos/nkostype#taxonomy
Ontology Syntaxhttp://purl.obolibrary.org/obo/oboformat/spec.html
identifierhttp://purl.obolibrary.org/obo/TEMP
is Aligned Tohttp://data.agroportal.lirmm.fr/ontologies/NCBITAXON
is Of Typehttp://omv.ontoware.org/2005/05/ontology#ApplicationOntology
mailing Listhttp://www.gramene.org/gramene-announce
Metadata vocabulary usedlocal:local
Natural Language
notesThe subset category "genome type" was introduced by Gramene, because this information is often used by plant breeders.
preferred Namespace Prefixgramene_taxonomy
Release date2013-04-26T00:00:00+00:00
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=GR-TAX&require_exact_match=true&q=
used Ontology Engineering ToolOBO-Edit 2.2
version2013
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2013 (Parsed, Indexed, Metrics, Annotator) 04/26/2013 06/30/2015 OBO | CSV | RDF/XML
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FAIR Scores beta
Total score : 234.0 ( 48.0% ) details
Metrics
Classes 58,598
Individuals 0
Properties 1
Maximum depth 22
Maximum number of children 381
Average number of children 5
Classes with a single child 5,688
Classes with more than 25 children 448
Classes with no definition 58,563
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Projects using GR-TAX

Agrisemantics Map of Data Standards

Computational Biology Institute