Ontologies
FLOPO
Flora Phenotype Ontology (FLOPO)
OWL
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Last submission date September 6, 2019
Summary

General information

Abstract

We used the Plant Ontology (PO) and the Phenotype And Trait Ontology (PATO) to extract entity-quality relationships from digitized taxon descriptions in Floras, and used a formal ontological approach based on phenotype description patterns and automated reasoning to generate the FLOPO. See more...

Description

The Flora Phenotype Ontology (FLOPO) is an ontology of phenotypes reported in Floras. The original version was developed at the pro-iBiosphere Hackathon in Leiden. This is the pre-classified version of the ontology. The Flora Phenotype Ontology is generated from the Flora Malesiana, Flora Gabon, Flora of Central Africa, and a collection of Kew's African Floras. Every class in the ontology has at least one taxon annotation. The (draft) taxon annotation are available at http://jagannath.pdn.cam.ac.uk/plant/flora/clean-rerun/ See more...
Initial created on September 6, 2019. For additional information, contact Robert Hoehndorf (robert.hoehndorf@kaust.edu.sa).

Languages

Keywords and classes

phenotype
biodiversity
flora
botany
morphological traits

Categories and subjects

Biodiv
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Ontology relations network

Submissions

Metrics

We have not yet calculated metrics for FLOPO

Identifiers

URI

http://purl.obolibrary.org/obo/flopo.owl
http://purl.obolibrary.org/obo/flopo.owl

Other identifier

https://doi.org/10.1186/s13326-016-0107-8
https://doi.org/10.1186/s13326-016-0107-8

AgroPortal URI

https://agroportal.lirmm.fr/ontologies/FLOPO
https://agroportal.lirmm.fr/ontologies/FLOPO

Dates

Creation date

September 6, 2019

Submission date

September 6, 2019

Modification date

May 15, 2016

Persons and organizations

Contact

Robert Hoehndorf

Contributor

Quentin Groom
Robert Hoehndorf (leechuck@leechuck.de)
George Gosline
Thomas Hamann
Claus Weiland

Other links

Projects and usage information

Projects using FLOPO

Agrisemantics Map of Data Standards

Known usage

The FLOPO is primarily intended as a framework based on which plant traits can be integrated computationally across all species and higher taxa of flowering plants. Importantly, it is not intended to replace established vocabularies or ontologies, but rather serve as an overarching framework based on which different application- and domain-specific ontologies, thesauri and vocabularies of phenotypes observed in flowering plants can be integrated.

Methodology and provenance

Created with

OWL API

Community

Repository

https://github.com/flora-phenotype-ontology/flopoontology/
https://github.com/flora-phenotype-ontology/flopoontology/

Bug database

https://github.com/flora-phenotype-ontology/flopoontology/issues
https://github.com/flora-phenotype-ontology/flopoontology/issues

Groups

OBO Foundry
GDR SemanDiv

Content

Identifier pattern

http://purl.obolibrary.org/obo/FLOPO_[0-9]{7}
http://purl.obolibrary.org/obo/FLOPO_[0-9]{7}

Preferred namespace URI

http://purl.obolibrary.org/obo/FLOPO_
http://purl.obolibrary.org/obo/FLOPO_

Preferred namespace prefix

flopo

Example of resource

http://purl.obolibrary.org/obo/FLOPO_0000003
http://purl.obolibrary.org/obo/FLOPO_0000003

Visits

Views of FLOPO

No views available for FLOPO.