Feature Annotation Location Description Ontology

Last uploaded: December 13, 2018
Details
Acronym FALDO
Visibility Public
Description FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources. The aim of this ontology is to describe the position of a sequence region or a feature. It does not aim to describe features or regions itself, but instead depends on resources such as the Sequence Ontology or the UniProt core ontolgy.
Status Production
Format OWL
Contact Jerven Bolleman, jerven.bolleman@isb-sib.ch
Categories Plant Genetic Resources
Groups Rice Data Interoperability working group, Wheat Data Interoperability working group
Additional Metadata
URIhttp://biohackathon.org/resource/faldo
bug Databasehttps://github.com/JervenBolleman/FALDO/issues
deprecatedfalse
endorsed ByRDA WDI (http://ist.blogs.inra.fr/wdi/)
endpoint
example Identifierhttp://biohackathon.org/resource/faldo#CollectionOfRegions
CreatorsJerven T. Bolleman, Christopher J. Mungall, Francesco Strozzi, Joachim Baran, Michel Dumontier, Raoul J. P. Bonnal, Robert Buels, Robert Hoehndorf, Takatomo Fujisawa, Toshiaki Katayama, Peter J. A. Cock
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
has Licensehttp://creativecommons.org/publicdomain/zero/1.0/
Ontology Syntaxhttp://www.w3.org/ns/formats/RDF_XML
has Prior VersionFALDO/submissions/1
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
keywordssequence ontology, annotation, data integration, sequence feature
known UsageFALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas.
more Permissionshttps://github.com/JervenBolleman/FALDO/blob/master/LICENSE
Natural Language
preferred Namespace Prefixfaldo
Release date2018-12-13T00:00:00+00:00
repositoryhttps://github.com/OBF/FALDO
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=FALDO&require_exact_match=true&q=
version2012/2013
Submissions
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Total score : 299.0 ( 62.0% ) details
Metrics
Classes 19
Individuals 0
Properties 11
Maximum depth 2
Maximum number of children 5
Average number of children 2
Classes with a single child 2
Classes with more than 25 children 0
Classes with no definition 3
Visits
includedInDataCatalog
Depiction
Projects using FALDO

Agrisemantics Map of Data Standards

RDA Wheat Interoperability Working Group