Feature Annotation Location Description Ontology

Last uploaded: December 13, 2018

Details

Acronym	FALDO
Visibility	Public
Description	FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources. The aim of this ontology is to describe the position of a sequence region or a feature. It does not aim to describe features or regions itself, but instead depends on resources such as the Sequence Ontology or the UniProt core ontolgy.
Status	Production
Format	OWL
Contact	Jerven Bolleman, jerven.bolleman@isb-sib.ch
Categories	Plant Genetic Resources
Groups	Rice Data Interoperability working group, Wheat Data Interoperability working group

Additional Metadata

URI	http://biohackathon.org/resource/faldo
bug Database	https://github.com/JervenBolleman/FALDO/issues
deprecated	false
endorsed By	RDA WDI (http://ist.blogs.inra.fr/wdi/)
endpoint
example Identifier	http://biohackathon.org/resource/faldo#CollectionOfRegions
Creators	Jerven T. Bolleman, Christopher J. Mungall, Francesco Strozzi, Joachim Baran, Michel Dumontier, Raoul J. P. Bonnal, Robert Buels, Robert Hoehndorf, Takatomo Fujisawa, Toshiaki Katayama, Peter J. A. Cock
has Formality Level	http://w3id.org/nkos/nkostype#ontology
has License	http://creativecommons.org/publicdomain/zero/1.0/
has Prior Version	http://data.agroportal.lirmm.fr/ontologies/FALDO/submissions/1
is Of Type	http://omv.ontoware.org/2005/05/ontology#DomainOntology
keywords	Sequence ontology, Annotation, Data integration, Sequence feature
known Usage	FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas.
Metadata vocabulary used	local:local
more Permissions	https://github.com/JervenBolleman/FALDO/blob/master/LICENSE
Natural Language
preferred Namespace Prefix	faldo
Release date	2018-12-13T00:00:00+00:00
repository	https://github.com/OBF/FALDO
URI Lookup Endpoint	http://data.agroportal.lirmm.fr/search?ontologies=FALDO&require_exact_match=true&q=
use Imports	local:local
version	2012/2013

No views of FALDO available

Classes	19
Individuals	0
Properties	11
Maximum depth	2
Maximum number of children	5
Average number of children	2
Classes with a single child	2
Classes with more than 25 children	0
Classes with no definition	3