Plant Environment Ontology

Last uploaded: November 11, 2023
Details
Acronym EO
Visibility Public
Description The Plant Environment Ontology describes the treatments,growing conditions, and/or study types used in various types of plant biology experiments. The subjects of the studies may also include in vitro plant structures (PO:0000004). A plant treatment is the most specific,and may be a component of a plant growing condition, and the plant study type. The broadest classes are the plant study types where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own and it may also involve instances of biotic and abiotic treatments and different growing conditions.
Status Retired
Format OWL
Contact Laurel Cooper, cooperl@science.oregonstate.edu
Pankaj Jaiswal, jaiswalp@science.oregonstate.edu
Categories Plant Science and Plant Products
Groups OBO Foundry, Rice Data Interoperability working group
Additional Metadata
URIhttp://purl.obolibrary.org/obo/peco.owl
bug Databasehttps://github.com/Planteome/plant-environment-ontology/issues
From the same domain thanPO, TO
deprecatedtrue
endorsed ByRDA WDI (http://ist.blogs.inra.fr/wdi/)
endpoint
example Identifierhttp://purl.obolibrary.org/obo/EO_0007263
has Domainhttps://data.agroportal.lirmm.fr/categories/PLANT
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
has LicenseCreative Commons License
Ontology Syntaxhttp://www.w3.org/ns/formats/RDF_XML
has Prior Versionhttp://data.agroportal.lirmm.fr/ontologies/EO/submissions/8
identifierhttp://purl.obolibrary.org/obo/peco.owl
is Format Ofhttp://purl.obolibrary.org/obo/eo.obo
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
Natural Language
notesNote this ontology is replaced by http://agroportal.lirmm.fr/ontologies/PECO. Migration Guide from EO to PECO If you are using classes like EO:nnnnnn then you should be able to substitute this for PECO:nnnnnn, as all of the numeric parts of the ID are preserved. For a more robust mechanism, peco.obo contains alt_ids, and peco.owl contains the equivalent replaced_by assertions, which point from an obsoleted EO class to the corresponding PECO class.
ontology Related ToPO, http://bioportal.bioontology.org/ontologies/CHEBI, PR, PATO, GO, TO
preferred Namespace Prefixplant_experimental_conditions_ontology
preferred Namespace Urihttp://purl.obolibrary.org/obo/
Release date2023-11-11T18:01:46+01:00
repositoryhttps://github.com/Planteome/plant-experimental-conditions-ontology
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=EO&require_exact_match=true&q=
use Importshttp://purl.obolibrary.org/obo/peco/patterns/exposure-chebi_role_pattern.owl, http://purl.obolibrary.org/obo/peco/imports/ncbitaxon_import.owl, http://purl.obolibrary.org/obo/peco/imports/envo_import.owl, http://purl.obolibrary.org/obo/peco/patterns/exposure-ncbitaxon_pattern.owl, http://purl.obolibrary.org/obo/peco/patterns/exposure-chebi_pattern.owl, http://purl.obolibrary.org/obo/peco/imports/ro_import.owl, http://purl.obolibrary.org/obo/peco/patterns/exposure-envo_pattern.owl, http://purl.obolibrary.org/obo/peco/imports/chebi_import.owl
used Ontology Engineering ToolOWL API
versionreleases/2023-11-10
Version IRIhttp://purl.obolibrary.org/obo/peco/releases/2023-11-10/peco.owl
Submissions
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Total score : 330.0 ( 69.0% ) details
Metrics
Classes 3,135
Individuals 0
Properties 119
Maximum depth 30
Maximum number of children 239
Average number of children 2
Classes with a single child 777
Classes with more than 25 children 3
Classes with no definition 1,346
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