Comparative Data Analysis Ontology

Last uploaded: December 1, 2022
Details
Acronym CDAO
Visibility Public
Description The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character.
Status Production
Format OWL
Contact Jim Balhoff, balhoff@nescent.org
Additional Metadata
URIhttp://purl.obolibrary.org/obo/cdao.owl
bug Databasehttps://sourceforge.net/p/cdao/bugs/
coverageComparison of two or more biological entities of the same class when the similarities and differences of the entities are treated explicitly as the product of an evolutionary process of descent with modification.
deprecatedfalse
endpoint
example Identifierhttp://purl.obolibrary.org/obo/CDAO_0000098
ContributorsLawrence Hunter, James Malone, Bjoern Peters, William Duncan, Barry Smith, Pat Hayes, Gwen Frishkoff, Carlo Torniai, Michel Dumontier, Chris Stoeckert, Matt Brush, Larisa Soldatova, Yongqun (Oliver) He, Mathias Brochhausen, David Osumi-Sutherland, Paolo Ciccarese, Sivaram Arabandi, Philippe Rocca-Serra, James A. Overton, Randy Dipert, Jennifer Fostel, Christian A. Boelling, Chris Mungall, Holger Stenzhorn, Werner Ceusters, Jonathan Rees, Darren Natale, Albert Goldfain, Satya Sahoo, Alan Ruttenberg, Melanie Courtot, Adam Goldstein, Ron Rudnicki, Jie Zheng, William Hogan
CreatorsCDAO Team
has Domaincomparative analysis, comparative data analysis, evolutionary comparative analysis, evolution, phylogeny, phylogenetics
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
has LicenseCreative Commons License
Ontology Syntaxhttp://www.w3.org/ns/formats/RDF_XML
has Prior Versionhttp://data.agroportal.lirmm.fr/ontologies/CDAO/submissions/3
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
keywords comparative analysis; comparative data analysis; evolutionary comparative analysis; evolution; phylogeny; phylogenetics
mailing Listhttps://lists.sourceforge.net/lists/listinfo/cdao-discuss
Natural Language
notes Comparison of two or more biological entities of the same class when the similarities and differences of the entities are treated explicitly as the product of an evolutionary process of descent with modification.
preferred Namespace Prefixcdao
Release date2022-12-01T00:00:00+00:00
repositoryhttps://sourceforge.net/projects/cdao/
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=CDAO&require_exact_match=true&q=
used Ontology Engineering ToolOWL API
version2013-02-01
Version IRIhttp://purl.obolibrary.org/obo/cdao/2022-11-30/cdao.owl
Submissions
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Total score : 307.0 ( 64.0% ) details
Metrics
Classes 165
Individuals 26
Properties 78
Maximum depth 4
Maximum number of children 18
Average number of children 3
Classes with a single child 15
Classes with more than 25 children 0
Classes with no definition 139
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Agrisemantics Map of Data Standards