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Ontologies
BIPON
General information
BiPON is an ontology permitting a multi-scale systemic representation of bacterial cellular processes and the coupling to their mathematical models. BiPON is further composed of two sub- ontologies, bioBiPON and modelBiPON. bioBiPON aims at organizing the systemic description of biological information while modelBiPON aims at describing the mathematical models (including parameters) associated to each biological process.
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Initial created on
May 4, 2017.
For additional information, contact
Anne Goelzer (anne.goelzer@inrae.fr).
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Identifiers
URI
AgroPortal URI
Dates
Creation date
May 4, 2017
Submission date
April 3, 2024
Modification date
November 9, 2017
Persons and organizations
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Indexed or included in catalog or repository
Methodology and provenance
The fields Knowledge representation paradigm, Engineering methodology, Created with, Accrual method, Accrual periodicity... are empty
Community
Notes
BiPON 1. Copyright of ontology The ontology was created jointly by the BioSys group at the research unit of Applied mathematics and computer science from genomes to the environment (MaIAGE) of the Institut National de la Recherche Agronomique (INRA) France and by the group Bioinformatics of the Laboratoire de recherche en informatique (LRI) of the Université Paris-Sud/CNRS, France. INRA and Université Paris-Sud own the copyright of the ontology BiPON. 2. License terms The ontology BiPON is licensed under the Creative Commons Attribution 4.0 Unported (CC BY 4.0) license. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA. 3. Notice This product contains references to classes of the Gene Ontology (GO) (http://geneontology.org/) developed by the Gene Ontology consortium, licensed under the terms Creative Commons Attribution 4.0 Unported license (https://creativecommons.org/licenses/by/4.0/). This product contains references to classes of the Chemical Entities of Biological Interest (ChEBI) (https://www.ebi.ac.uk/chebi/init.do) developed by the ChEBI consortium. This product contains references to classes of the Sequence Ontology (SO) (http://www.sequenceontology.org/) developed by the SO consortium and are freely reusable. This product contains references to classes of the Systems Biology Ontology (SBO) (http://www.ebi.ac.uk/sbo/main/) developed by the SBO consortium, licensed under the terms of Artistic License 2.0 (https://opensource.org/licenses/artistic-license-2.0.php). This product contains references to properties of the Relation Ontology (RO) (http://www.obofoundry.org/ontology/ro.html) developed by the OBO foundry, licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/). This product contains references to properties of the Basic Formal Ontology (BFO) (http://ifomis.uni-saarland.de/bfo/) developed by the BFO consortium, licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/). 4. Contact For questions and remarks concerning BiPON: Anne Goelzer Anne.Goelzer@inra.fr, BiPON 1. Copyright of ontology The ontology was created jointly by the BioSys group at the research unit of Applied mathematics and computer science from genomes to the environment (MaIAGE) of the Institut National de la Recherche Agronomique (INRA) France and by the group Bioinformatics of the Laboratoire de recherche en informatique (LRI) of the Université Paris-Sud/CNRS, France. INRA and Université Paris-Sud own the copyright of the ontology BiPON. 2. License terms The ontology BiPON is licensed under the Creative Commons Attribution 4.0 Unported (CC BY 4.0) license. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA. 3. Notice This product contains references to classes of the Gene Ontology (GO) (http://geneontology.org/) developed by the Gene Ontology consortium, licensed under the terms Creative Commons Attribution 4.0 Unported license (https://creativecommons.org/licenses/by/4.0/). This product contains references to classes of the Chemical Entities of Biological Interest (ChEBI) (https://www.ebi.ac.uk/chebi/init.do) developed by the ChEBI consortium. This product contains references to classes of the Sequence Ontology (SO) (http://www.sequenceontology.org/) developed by the SO consortium and are freely reusable. This product contains references to classes of the Systems Biology Ontology (SBO) (http://www.ebi.ac.uk/sbo/main/) developed by the SBO consortium, licensed under the terms of Artistic License 2.0 (https://opensource.org/licenses/artistic-license-2.0.php). This product contains references to properties of the Relation Ontology (RO) (http://www.obofoundry.org/ontology/ro.html) developed by the OBO foundry, licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/). This product contains references to properties of the Basic Formal Ontology (BFO) (http://ifomis.uni-saarland.de/bfo/) developed by the BFO consortium, licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/). 4. Contact For questions and remarks concerning BiPON: Anne Goelzer Anne.Goelzer@inra.frGroups
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