BiPOm is an ontology based on systemic representation of metabolic processes. BiPOm is an ontological model carrying the main biological processes and molecular roles/functions at a high level of genericity where the usual annotated resources are treated as instances. BiPOm, 1) contains biological knowledge as instances and 2) uses automatic reasoning through Semantic Web Rule Language (SWRL) in order to automatically infer, formalize and refine properties of molecules.
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Initial created on
April 15, 2020.
For additional information, contact
Anne Goelzer (anne.goelzer@inrae.fr).
The fields Knowledge representation paradigm, Engineering methodology, Created with, Accrual method, Accrual periodicity... are empty
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Notes
BiPOm
1. Copyright of ontology
The ontology was created jointly by the BioSys group at the research unit of Applied mathematics and computer science
from genomes to the environment (MaIAGE) of the Institut National de la Recherche Agronomique (INRA) France, by the group the Large-scale Heterogeneous DAta and Knowledge (LaHDAK team) of the Laboratoire de recherche en informatique (LRI) of the Université Paris-Sud/CNRS, France and by the Département MMIP AgroParisTech of the INRA, France.
INRA, Agroparistech and Université Paris-Sud own the copyright of the ontology BiPOm.
2. License terms
The ontology BiPOm is licensed under the Creative Commons
Attribution 4.0 Unported (CC BY 4.0) license. To view a
copy of this license, visit http://creativecommons.org/licenses/by/4.0/
or send a letter to Creative Commons, 444 Castro Street, Suite 900,
Mountain View, California, 94041, USA.
3. Notice
This product contains references to classes of the Gene Ontology (GO) (http://geneontology.org/) developed by the Gene Ontology consortium,
licensed under the terms Creative Commons Attribution 4.0 Unported license (https://creativecommons.org/licenses/by/4.0/).
This product contains references to classes of the Chemical Entities of Biological Interest (ChEBI) (https://www.ebi.ac.uk/chebi/init.do) developed by the ChEBI consortium.
This product contains references to classes of the Sequence Ontology (SO) (http://www.sequenceontology.org/) developed by the SO consortium and are freely reusable.
This product contains references to classes of the Systems Biology Ontology (SBO) (http://www.ebi.ac.uk/sbo/main/) developed by the SBO consortium,
licensed under the terms of Artistic License 2.0 (https://opensource.org/licenses/artistic-license-2.0.php).
This product contains references to properties of the Relation Ontology (RO) (http://www.obofoundry.org/ontology/ro.html) developed by the OBO foundry,
licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/).
This product contains references to properties of the Basic Formal Ontology (BFO) (http://ifomis.uni-saarland.de/bfo/) developed by the BFO consortium,
licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/).
4. Contact
For questions and remarks concerning BiPOm:
Anne Goelzer
Anne.Goelzer
Groups
National research institute for agriculture, food and the environment
