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| Number of classes: | 2002 |
|---|---|
| Number of individuals: | 0 |
| Number of properties: | 13 |
| Maximum depth: | 10 |
| Maximum number of children: | 65 |
| Average number of children: | 3 |
| Classes with a single child: | 126 |
| Classes with more than 25 children: | 4 |
| Classes with no definition: | 214 |
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Details
| Acronym | PO |
|---|---|
| Visibility | Public |
| Description | The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. |
| Status | Production |
| Format | OWL |
| Contact |
Laurel Cooper, cooperl@science.oregonstate.edu Pankaj Jaiswal, jaiswalp@science.oregonstate.edu |
| Home Page | http://www.planteome.org |
| Publications Page | http://wiki.plantontology.org/index.php/Related_Publications |
| Documentation Page | http://www.plantontology.org/docs/docs.html |
| Categories | Biodiversity and Ecology, Plant Anatomy and Development, Plant Science and Plant Products |
| Groups | OBO Foundry, Rice Data Interoperability working group |
Additional Metadata
| URI | http://purl.obolibrary.org/obo/po.owl |
|---|---|
| Natural Language | |
| version | September 2016 |
| Release date | 2018-09-26T18:03:02+02:00 |
| known Usage | Used to annotate phenotypes and patterns of gene expression |
| endorsed By | RDA WDI (http://ist.blogs.inra.fr/wdi/) |
| has Domain | http://data.agroportal.lirmm.fr/categories/PLANTDEV |
| has Formality Level | http://w3id.org/nkos/nkostype#ontology |
| has License |  |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
| used Ontology Engineering Tool | OWL API |
| has Prior Version | PO/submissions/11 |
| deprecated | false |
| Version IRI | http://purl.obolibrary.org/obo/po/releases/2017-02-02/po.owl |
| ontology Related To | EO, GO, http://bioportal.bioontology.org/ontologies/CHEBI, PCO, PATO, TO, CL, PR |
| From the same domain than | EO, TO |
| identifier | |
| abstract | A non extensive collection of terms that describe structure and developmental stages of a plant. Arranged in a structured order/network based on the biological concept describing the term's relationship in an ontology tree. |
| is Format Of | http://purl.obolibrary.org/obo/po.obo |
| endpoint |  |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=PO&require_exact_match=true&q= |
| preferred Namespace Prefix | plant_ontology |
| example Identifier | http://purl.obolibrary.org/obo/NCBITaxon_33090 |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| September 2016 (Parsed, Indexed, Metrics, Annotator) | 09/26/2018 | 09/26/2018 | OWL | CSV | RDF/XML |
| September 2016 (Archived) | 08/15/2018 | 08/15/2018 | OWL |
| September 2016 (Archived) | 08/14/2018 | 08/14/2018 | OWL |
| September 2016 (Archived) | 07/17/2018 | 07/17/2018 | OWL |
| September 2016 (Archived) | 12/15/2017 | 12/15/2017 | OWL |
| September 2016 (Archived) | 12/12/2017 | 12/12/2017 | OWL |
| September 2016 (Archived) | 02/03/2017 | 02/03/2017 | OWL |
| unknown (Archived) | 01/06/2017 | 01/06/2017 | OWL |
| unknown (Archived) | 09/19/2016 | 09/19/2016 | OWL |
| unknown (Archived) | 05/19/2016 | 05/19/2016 | OWL |
| unknown (Archived) | 08/20/2013 | 02/02/2016 | OWL |
| Version # 20 (Archived) | 08/20/2013 | 06/23/2015 | OBO |
| more... | |||
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Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
|
AgBase
|
AgBase is a curated resource for functional analysis of...
AgBase is a curated resource for functional analysis of agricultural plant and animal gene products including Gene Ontology annotations.
|
Fiona McCarthy (fionamcc@email.arizona.edu)
Fiona McCarthy (fionamcc@email.arizona.edu)
|
University of Arizona |
|
Agronomic Linked Data
|
AgroLD is a RDF knowledge base that consists of data integrated...
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.
|
Pierre Larmande (pierre.larmande@ird.fr)
Pierre Larmande (pierre.larmande@ird.fr)
|
IRD |
|
Computational Biology Institute
|
Modeling, processing and analysis of large scale data in biology, health, agronomy and environment.
Modeling, processing and analysis of large scale data in biology, health, agronomy and environment.
|
Pierre Larmande (pierre.larmande@ird.fr)
Pierre Larmande (pierre.larmande@ird.fr)
|
University of Montpellier, CNRS, CIRAD, INRIA, IRD, INRA, SupAgro, INSERM |
|
Hardwood Genomics Project
|
The Hardwood Genomics Web serves forest tree scientists by...
The Hardwood Genomics Web serves forest tree scientists by providing online access to hardwood tree genomic and genetic data, including assembled reference genomes, transcriptomes, and genetic mapping information.
|
Margaret Staton (mstaton1@utk.edu), Bradford Condon (bcondon@utk.edu)
Margaret Staton (mstaton1@utk.edu), Bradford Condon (bcondon@utk.edu)
|
University of Tennessee |
|
Legume Information System
|
The Legume Information System (LIS) contains genetic and...
The Legume Information System (LIS) contains genetic and genomic data for crop and model legumes. It includes genome browsers for more than ten legume species, as well as genetic maps, gene families, an annotation service, synteny viewer, gene reports, and sequence search tools.
|
Steven Cannon (steven.cannon@ars.usda.gov)
Steven Cannon (steven.cannon@ars.usda.gov)
|
Agricultural Research Service (USDA ARS) and Résultats de recherche National Clonal Germplasm Repository (NCGR) |
|
Maize Genetics and Genomics Database
|
MaizeGDB is a community-oriented, long-term, federally funded...
MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.
|
Lisa Harper (lisaharper@me.com)
Lisa Harper (lisaharper@me.com)
|
Agricultural Research Service (USDA ARS) |
|
PeanutBase
|
PeanutBase contains genetic and genomic data for peanut and its...
PeanutBase contains genetic and genomic data for peanut and its wild relatives. It includes genome browsers, genetic maps, traits, variety images, interactive maps, gene reports, and sequence search tools.
|
Ethy Cannon (ekcannon@iastate.edu)
Ethy Cannon (ekcannon@iastate.edu)
|
Agricultural Research Service (USDA ARS) and Iowa State University |
|
Plant Genome and Systems Biology
|
The PGSB plant genomics group focuses on the analysis of plant...
The PGSB plant genomics group focuses on the analysis of plant genomes, using bioinformatic techniques. To store and manage the data, we developed a database, PlantsDB, that aims to provide a data and information resource for individual plant species. In addition PlantsDB provides a platform for integrative and comparative plant genome research.
|
Klaus Mayer (kmayer@helmholtz-muenchen.de)
Klaus Mayer (kmayer@helmholtz-muenchen.de)
|
German Research Center for Environmental Health |
|
Planteome
|
The Planteome Project is a centralized platform where reference...
The Planteome Project is a centralized platform where reference ontologies for plants will be used to access plant genomics data.
|
Pankaj Jaiswal (jaiswalp@science.oregonstate.edu)
Pankaj Jaiswal (jaiswalp@science.oregonstate.edu)
|
Oregon State University |
|
SoyBase and the Soybean Breeder's Toolbox
|
Integrating Genetics and Molecular Biology for Soybean Researchers.
Integrating Genetics and Molecular Biology for Soybean Researchers.
|
David Grant (david.grant@ars.usda.gov)
David Grant (david.grant@ars.usda.gov)
|
USDA-ARS, Ames, IA (https://www.ars.usda.gov) |
|
The Arabidopsis Information Resource
|
The Arabidopsis Information Resource (TAIR) maintains a...
The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana.
|
TAIR curator (curator@arabidopsis.org)
TAIR curator (curator@arabidopsis.org)
|
Phoenix Bioinformatics |
|
VEST-AgroPortal Map of Standards
|
This VEST-AgroPortal provides a global map of existing...
This VEST-AgroPortal provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).
|
Valeria Pesce (valeria.pesce@fao.org)
Valeria Pesce (valeria.pesce@fao.org)
|
Food & Agriculture Organization |
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