AgBase is a curated resource for functional analysis of agricultural plant and animal gene products including Gene Ontology annotations.

Fiona McCarthy (fionamcc@email.arizona.edu)

This Agrisemantics (previously called VEST-AgroPortal) Map of Data Standards provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).

Valeria Pesce (valeria.pesce@fao.org)

AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.

Pierre Larmande (pierre.larmande@ird.fr)

COPO is a portal for plant scientists to describe, store and retrieve data more easily, using community standards and public repositories that enable the open sharing of results.

Felix Shaw (felix.shaw@earlham.ac.uk)

Modeling, processing and analysis of large scale data in biology, health, agronomy and environment.

Pierre Larmande (pierre.larmande@ird.fr)

The Hardwood Genomics Web serves forest tree scientists by providing online access to hardwood tree genomic and genetic data, including assembled reference genomes, transcriptomes, and genetic mapping information.

Margaret Staton (mstaton1@utk.edu), Bradford Condon (bcondon@utk.edu)

The Legume Information System (LIS) contains genetic and genomic data for crop and model legumes. It includes genome browsers for more than ten legume species, as well as genetic maps, gene families, an annotation service, synteny viewer, gene reports, and sequence search tools.

Steven Cannon (steven.cannon@ars.usda.gov)

MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.

Lisa Harper (lisaharper@me.com)

MIAPPE is an open, community driven project to harmonize data from plant phenotyping experiments. MIAPPE comprises both a conceptual checklist of metadata required to adequately describe a plant phenotyping experiment, and software to validate, store and disseminate MIAPPE-compliant data. We welcome contributions from anyone interested in plant phenotyping data.

Cyril Pommier (cyril.pommier@inrae.fr)

The Monarch Initiative is an integrative data and analytic platform connecting phenotypes to genotypes across species, bridging basic and applied research with semantics-based analysis.

https://github.com/monarch-initiative/helpdesk

PeanutBase contains genetic and genomic data for peanut and its wild relatives. It includes genome browsers, genetic maps, traits, variety images, interactive maps, gene reports, and sequence search tools.

Ethy Cannon (ekcannon@iastate.edu)

The PGSB plant genomics group focuses on the analysis of plant genomes, using bioinformatic techniques. To store and manage the data, we developed a database, PlantsDB, that aims to provide a data and information resource for individual plant species. In addition PlantsDB provides a platform for integrative and comparative plant genome research.

Klaus Mayer (kmayer@helmholtz-muenchen.de)

The Planteome Project is a centralized platform where reference ontologies for plants will be used to access plant genomics data.

Pankaj Jaiswal (jaiswalp@science.oregonstate.edu)

The Wheat Data Interoperability Working Group aims to provide a common framework for describing, representing linking and publishing Wheat data with respect to open standards. The RDA WDI group has a specific slice in AgroPortal: http://wheat.agroPortal.lirmm.fr

Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)

Integrating Genetics and Molecular Biology for Soybean Researchers.

David Grant (david.grant@ars.usda.gov)

The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana.

TAIR curator (curator@arabidopsis.org)