ontologies
PEAO
Plant Experimental Assay Ontology (PEAO)
OWL
No license
Last submission date June 30, 2020
Summary
Classes
Properties
Instances
Notes
Mappings
Widgets
Sparql

General information

The Plant domain has been the subject of several attempts to structure and formally define terms and corresponding relations, such as their anatomical features, developmental stages, and the application of particular experimental procedures to a biological problem. However, a focus on experimental assays in order to describe the whole experimental procedure, to the best of our knowledge, has only been attempted in the context of a very general description based on classical views of the scientific method. In this study, we focus on the development and proposal of an ontology dedicated to the description of these experimental procedures, regardless of the scientific questions that prompted the assays. This ontology includes entities from three distinct realms (biological, physical and data), which include both experimental products, their relations and the protocols describing their manipulation. See more...
Initial created on August 2, 2019. For additional information, contact Peao Team (peaoteam@gmail.com).

Languages

Categories and subjects

Plant Anatomy and Development
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FAIR score
Beta

Total score : 270.0 ( 56.0%)
See details

Submissions

Metrics

Identifiers

URI

https://bitbucket.org/PlantExpAssay/ontology/raw/v0.1/PlantExperimentalAssayOntology.owl
https://bitbucket.org/PlantExpAssay/ontology/raw/v0.1/PlantExperimentalAssayOntology.owl

Dates

Creation date

August 2, 2019

Submission date

June 30, 2020

Modification date

August 2, 2019

Persons and organizations

Contact

PEAO Team

Contributor

Cátia Vaz
Nuno D. Mendes
Pedro T. Monteiro
Inês Chaves
Daniel Faria

Other links

Projects and usage information

Projects using PEAO

Agrisemantics Map of Data Standards

Known usage

The final outcome is a useful and comprehensive ontology in the plant domain, that will be useful for data integration and querying heterogeneous data.

Methodology and provenance

Created with

OWL API

Community

Repository

https://bitbucket.org/PlantExpAssay/ontology/src/
https://bitbucket.org/PlantExpAssay/ontology/src/

Bug database

https://bitbucket.org/PlantExpAssay/ontology/issues
https://bitbucket.org/PlantExpAssay/ontology/issues

Notes

This ontology provide the means to efficiently gather information concerning plant experimental assays and elicit the extraction of relevant information. The representation of the data using this specifically designed for a Plant Experimental Assays (PEAO) enables the preservation of the semantic relationships between the entities represented therein, which facilitates the interpretation of the results and the integration of data produced by different experiments. Moreover, the workflow established in PEAO supports the management of all the gathered data and the disperse information.

Groups

Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Preferred namespace prefix

peao

Example of resource

http://purl.obolibrary.org/obo/EO_0007263
http://purl.obolibrary.org/obo/EO_0007263

Visits

Views of PEAO

No views available for PEAO.