EDAM | Classes | AgroPortal

ID	http://edamontology.org/data_2535 http://edamontology.org/data_2535 https://agroportal.lirmm.fr/ontologies/EDAM/data_2535 Loading
Preferred name	Sequence tag profile
Synonyms	Sequence tag profile (with gene assignment) Sequencing-based expression profile
Definitions	SAGE, MPSS and SBS experiments are usually performed to study gene expression. The sequence tags are typically subsequently annotated (after a database search) with the mRNA (and therefore gene) the tag was extracted from. This includes tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data. Typically this is the sequencing-based expression profile annotated with gene identifiers.

rdfs:comment	SAGE, MPSS and SBS experiments are usually performed to study gene expression. The sequence tags are typically subsequently annotated (after a database search) with the mRNA (and therefore gene) the tag was extracted from. This includes tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data. Typically this is the sequencing-based expression profile annotated with gene identifiers.
oboinowl_gen:inSubset	http://edamontology.org/bio http://edamontology.org/data
oboinowl_gen:hasExactSynonym	Sequencing-based expression profile
created_in	November 12, 2024
oboinowl_gen:hasDefinition	Output from a serial analysis of gene expression (SAGE), massively parallel signature sequencing (MPSS) or sequencing by synthesis (SBS) experiment. In all cases this is a list of short sequence tags and the number of times it is observed.
rdf:type	http://www.w3.org/2002/07/owl#Class
rdfs:label	Sequence tag profile
rdfs:subClassOf	http://edamontology.org/data_0928
oboinowl_gen:hasNarrowSynonym	Sequence tag profile (with gene assignment)

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