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Ontologies
VT
Vertebrate Trait Ontology (VT)
OWL
View license
Last submission date February 12, 2025
Summary
Classes
Properties
Instances
Notes
Mappings
Widgets
SPARQL

General information

Abstract

Iowa State University, Mouse Genome Informatics, the Rat Genome Database, European Animal Disease Genomics Network of Excellence (EADGENE) and the French National Institute for Agricultural Research (INRA) have worked together to incorporate the Mammalian Phenotype (MP) ontology and the Animal Trait Ontology (ATO) to develop a Vertebrate Trait Ontology (VT), with emphasis on morphological, physiological and developmental traits in vertebrates. This project is aimed at enhancing the ability to standardize phenotype nomenclature across species. This will undoubtedly help the animal genome community by facilitating the transfer of genomics information from some well studied species.

Description

The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms.
Initial created on February 12, 2025. For additional information, contact Jim Reecy (jreecy@iastate.edu) and Cari Park (caripark@iastate.edu).

Languages

Categories and subjects

Anim
Pheno
Animal
Svg Vector Icons : http://www.onlinewebfonts.com/icon
Export all metadata

Metrics

FAIR score
Beta

Total score : 328.5 ( 68.0%)
We could not collect the data from the fairness service

Ontology relations network

View of (bpm:viewOf) ×
Imports(omv:useImports) ×
Has equivalences with(door:isAlignedTo) ×
Generally related to or relies on(door:ontologyRelatedTo) ×
Backward compatible(omv:isBackwardCompatibleWith) ×
Incompatible(omv:isIncompatibleWith) ×
Comes from the same domain(door:comesFromTheSameDomain) ×
Similar to(door:similarTo) ×
Specializes(door:explanationEvolution) ×
Generalizes(voaf:generalizes) ×
Disparate modelling with(door:hasDisparateModelling) ×
Has part (has views)(dct:hasPart) ×
Used by(voaf:usedBy) ×
Translation(schema:workTranslation) ×
Translation of(schema:translationOfWork) ×

Submissions

Version
Modified Submitted
Actions

2025-02-11

 November 20, 2023 February 12, 2025
OWL CSV RDF/XML DIFF

2025-01-30

 November 20, 2023 January 31, 2025
OWL DIFF

2025-01-08

 November 20, 2023 January 9, 2025
OWL DIFF

2024-12-12

 November 20, 2023 December 13, 2024
OWL DIFF

2024-11-26

 November 20, 2023 December 2, 2024
OWL DIFF

2024-11-22

 November 20, 2023 November 23, 2024
OWL DIFF

2024-11-15

 November 20, 2023 November 16, 2024
OWL DIFF

2024-11-05

 November 20, 2023 November 6, 2024
OWL DIFF

2024-10-16

 November 20, 2023 October 17, 2024
OWL DIFF

2024-10-02

 November 20, 2023 October 3, 2024
OWL DIFF

2024-08-13

 November 20, 2023 September 24, 2024
OWL DIFF

2024-08-13

 November 20, 2023 August 30, 2024
OWL DIFF

2024-07-22

 November 20, 2023 July 24, 2024
OWL DIFF

2024-07-11

 November 20, 2023 July 12, 2024
OWL DIFF

2024-07-08

 November 20, 2023 July 9, 2024
OWL DIFF

2024-06-18

 November 20, 2023 June 20, 2024
OWL DIFF

2024-06-12

 November 20, 2023 June 18, 2024
OWL DIFF

2024-05-31

 November 20, 2023 June 1, 2024
OWL DIFF

2024-05-15

 November 20, 2023 May 15, 2024
OWL DIFF

2024-04-23

 November 20, 2023 April 24, 2024
OWL DIFF

2024-03-22

 November 20, 2023 March 27, 2024
OWL DIFF

2024-02-27

 November 20, 2023 February 28, 2024
OWL DIFF

2024-01-17

 November 20, 2023 January 24, 2024
OWL DIFF

13.14

 November 20, 2023 November 21, 2023
OWL DIFF

data-version: 12.10

 April 7, 2022 April 11, 2023
OWL DIFF

12.1

 April 7, 2022 January 8, 2022
OWL DIFF

11.4

 April 23, 2020 February 17, 2021
OWL DIFF

11.2

 April 23, 2020 February 3, 2021
OWL DIFF

11.1

 April 23, 2020 January 22, 2021
OWL DIFF

10.7

 April 23, 2020 November 20, 2020
OWL DIFF

10.6

 April 23, 2020 August 28, 2020
OWL DIFF

10.5

 April 23, 2020 July 17, 2020
OWL DIFF

10.4

 April 23, 2020 May 28, 2020
OWL DIFF

10.3

 April 23, 2020 May 5, 2020
OWL DIFF

10.2

 March 4, 2020 May 4, 2020
OWL

10.1

 January 14, 2020 May 4, 2020
OWL

9.5

 September 12, 2019 May 4, 2020
OWL

9.4

 October 16, 2019 May 4, 2020
OWL DIFF

8.1

 December 2, 2016 May 2, 2020
OWL DIFF

7.7

 December 2, 2016 December 3, 2017
OWL DIFF

7.3

 March 17, 2017
OBO
more...

Identifiers

URI

http://purl.obolibrary.org/obo/vt.owl
http://purl.obolibrary.org/obo/vt.owl

Version IRI

http://purl.obolibrary.org/obo/vt/releases/2025-02-11/vt.owl
http://purl.obolibrary.org/obo/vt/releases/2025-02-11/vt.owl

Other identifier

https://doi.org/10.1186/2041-1480-4-13
https://doi.org/10.1186/2041-1480-4-13

AgroPortal URI

https://agroportal.lirmm.fr/ontologies/VT
https://agroportal.lirmm.fr/ontologies/VT

Dates

Creation date

February 12, 2025

Submission date

February 12, 2025

Modification date

November 20, 2023

Persons and organizations

Contact

Jim Reecy
Cari Park

Other links

Projects and usage information

Methodology and provenance

Created with

OBO-Edit 2.3.1

Accrual periodicity

http://purl.org/cld/freq/monthly
http://purl.org/cld/freq/monthly

Community

Repository

https://github.com/AnimalGenome/vertebrate-trait-ontology
https://github.com/AnimalGenome/vertebrate-trait-ontology

Bug database

https://github.com/AnimalGenome/vertebrate-trait-ontology/issues
https://github.com/AnimalGenome/vertebrate-trait-ontology/issues

Groups

Consortium of Agricultural Biological Databases
OBO Foundry

Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Identifier pattern

http://purl.obolibrary.org/obo/VT_[0-9]{7}
http://purl.obolibrary.org/obo/VT_[0-9]{7}

Preferred namespace URI

http://purl.obolibrary.org/obo/VT_
http://purl.obolibrary.org/obo/VT_

Preferred namespace prefix

Trait.ontology

Example of resource

http://purl.obolibrary.org/obo/VT_1000047
http://purl.obolibrary.org/obo/VT_1000047

Metadata vocabulary used

oboinowl_gen

Visits

Views of VT

No views available for VT.
ID http://purl.obolibrary.org/obo/VT_0003517
http://purl.obolibrary.org/obo/VT_0003517
https://agroportal.lirmm.fr/ontologies/VT/VT_0003517
Preferred name

labia majora size trait
Definitions
Any measurable or observable characteristic related to the physical magnitude of the folds of skin which form the outer lips (labia majora) on both sides of the vaginal opening.

Raw data

rdf:type
rdfs:subClassOf
rdfs:label
labia majora size trait
skos:notation
VT:0003517
obo_purl:IAO_0000115
Any measurable or observable characteristic related to the physical magnitude of the folds of skin which form the outer lips (labia majora) on both sides of the vaginal opening.
oboinowl_gen:hasDbXref
ATOL:0000463
oboinowl_gen:hasOBONamespace
Trait.ontology
oboinowl_gen:id
VT:0003517
JSON-LD
RDF/XML
N-TRIPLE
TURTLE
No result found
Add comment
Add proposal
Subject Author Type Created
No notes to display
ID http://purl.org/dc/terms/contributor
http://purl.org/dc/terms/contributor
https://agroportal.lirmm.fr/ontologies/VT/contributor
Type http://www.w3.org/2002/07/owl#AnnotationProperty

Raw data
No result found