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| Number of classes: | 2809 |
|---|---|
| Number of individuals: | 0 |
| Number of properties: | 125 |
| Maximum depth: | 12 |
| Maximum number of children: | 96 |
| Average number of children: | 4 |
| Classes with a single child: | 121 |
| Classes with more than 25 children: | 9 |
| Classes with no definition: | 972 |
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Details
| Acronym | PATO |
|---|---|
| Visibility | Public |
| Description | An ontology of phenotypic qualities (properties, attributes or characteristics). |
| Status | Production |
| Format | OWL |
| Contact | George Gkoutos, geg18@aber.ac.uk |
| Home Page | https://github.com/pato-ontology |
| Publications Page | https://doi.org/10.1016/j.tree.2007.03.013 |
| Documentation Page | https://github.com/pato-ontology/pato/ |
| Categories | Biodiversity and Ecology, Plant Phenotypes and Traits |
| Groups | OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group |
Additional Metadata
| URI | http://purl.obolibrary.org/obo/pato.owl |
|---|---|
| Natural Language | |
| version | 2016-09-15 |
| Release date | 2020-08-02T18:04:13+02:00 |
| endorsed By | RDA WDI (http://ist.blogs.inra.fr/wdi/) |
| has Domain | phenotype |
| has Formality Level | http://w3id.org/nkos/nkostype#ontology |
| has License |  |
| Ontology Syntax | http://www.w3.org/ns/formats/RDF_XML |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
| used Ontology Engineering Tool | OBO-Edit 2.3.1 |
| has Prior Version | PATO/submissions/17 |
| deprecated | false |
| Version IRI | http://purl.obolibrary.org/obo/pato/releases/2016-09-15/pato.owl |
| ontology Related To | ENVO, CL |
| identifier | http://purl.obolibrary.org/obo/pato.owl |
| Alternative name | Phenotype and Attribute Ontology |
| is Format Of | http://purl.obolibrary.org/obo/pato.obo |
| endpoint |  |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=PATO |
| used By | ENVO, TOP, CL |
| preferred Namespace Prefix | quality |
| repository | https://github.com/pato-ontology/pato/ |
| bug Database | https://github.com/pato-ontology/pato/issues |
| mailing List | local:obo-phenotype@lists.sourceforge.net |
| example Identifier | http://purl.obolibrary.org/obo/PATO_0001464 |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 2016-09-15 (Parsed, Indexed, Metrics, Annotator) | 08/02/2020 | 08/02/2020 | OWL | CSV | RDF/XML |
| 2016-09-15 (Archived) | 05/09/2020 | 05/09/2020 | OWL |
| 2016-09-15 (Archived) | 05/08/2020 | 05/08/2020 | OWL |
| 2016-09-15 (Archived) | 03/25/2020 | 03/25/2020 | OWL |
| 2016-09-15 (Archived) | 02/13/2020 | 02/13/2020 | OWL |
| 2016-09-15 (Archived) | 12/03/2019 | 12/03/2019 | OWL |
| 2016-09-15 (Archived) | 11/06/2019 | 11/06/2019 | OWL |
| 2016-09-15 (Archived) | 10/31/2019 | 10/31/2019 | OWL |
| 2016-09-15 (Archived) | 09/05/2019 | 09/05/2019 | OWL |
| 2016-09-15 (Archived) | 11/13/2018 | 11/13/2018 | OWL |
| 2016-09-15 (Archived) | 08/15/2018 | 08/15/2018 | OWL |
| 2016-09-15 (Archived) | 08/10/2018 | 08/10/2018 | OWL |
| 2016-09-15 (Archived) | 03/28/2018 | 03/28/2018 | OWL |
| 2016-09-15 (Archived) | 02/07/2018 | 02/07/2018 | OWL |
| 2016-09-15 (Archived) | 07/10/2017 | 07/10/2017 | OWL |
| 2016-09-15 (Archived) | 03/22/2017 | 03/22/2017 | OWL |
| 2016-09-15 (Archived) | 03/13/2017 | 03/13/2017 | OBO |
| 2016-09-15 (Archived) | 08/15/2014 | 06/23/2015 | OBO |
| more... | |||
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Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
|
Agrisemantics Map of Data Standards
|
This Agrisemantics (previously called VEST-AgroPortal) Map of...
This Agrisemantics (previously called VEST-AgroPortal) Map of Data Standards provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).
|
Valeria Pesce (valeria.pesce@fao.org)
Valeria Pesce (valeria.pesce@fao.org)
|
Food & Agriculture Organization |
|
Agronomic Linked Data
|
AgroLD is a RDF knowledge base that consists of data integrated...
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.
|
Pierre Larmande (pierre.larmande@ird.fr)
Pierre Larmande (pierre.larmande@ird.fr)
|
IRD |
|
Computational Biology Institute
|
Modeling, processing and analysis of large scale data in biology, health, agronomy and environment.
Modeling, processing and analysis of large scale data in biology, health, agronomy and environment.
|
Pierre Larmande (pierre.larmande@ird.fr)
Pierre Larmande (pierre.larmande@ird.fr)
|
University of Montpellier, CNRS, CIRAD, INRIA, IRD, INRAE, SupAgro, INSERM |
|
Dictybase
|
Central resource for Dictyostelid genomics
Central resource for Dictyostelid genomics
|
Rex Chisholm (r-chisholm@northwestern.edu)
Rex Chisholm (r-chisholm@northwestern.edu)
|
Northwestern University |
|
Hardwood Genomics Project
|
The Hardwood Genomics Web serves forest tree scientists by...
The Hardwood Genomics Web serves forest tree scientists by providing online access to hardwood tree genomic and genetic data, including assembled reference genomes, transcriptomes, and genetic mapping information.
|
Margaret Staton (mstaton1@utk.edu), Bradford Condon (bcondon@utk.edu)
Margaret Staton (mstaton1@utk.edu), Bradford Condon (bcondon@utk.edu)
|
University of Tennessee |
|
Monarch Initiative
|
The Monarch Initiative is an integrative data and analytic...
The Monarch Initiative is an integrative data and analytic platform connecting phenotypes to genotypes across species, bridging basic and applied research with semantics-based analysis.
|
https://github.com/monarch-initiative/helpdesk
https://github.com/monarch-initiative/helpdesk
|
https://monarchinitiative.org/about/team |
|
Planteome
|
The Planteome Project is a centralized platform where reference...
The Planteome Project is a centralized platform where reference ontologies for plants will be used to access plant genomics data.
|
Pankaj Jaiswal (jaiswalp@science.oregonstate.edu)
Pankaj Jaiswal (jaiswalp@science.oregonstate.edu)
|
Oregon State University |
|
RDA Wheat Interoperability Working Group
|
The Wheat Data Interoperability Working Group aims to provide a...
The Wheat Data Interoperability Working Group aims to provide a common framework for describing, representing linking and publishing Wheat data with respect to open standards.
The RDA WDI group has a specific slice in AgroPortal: http://wheat.agroPortal.lirmm.fr
|
Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)
Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)
|
Research Data Alliance |
|
The Arabidopsis Information Resource
|
The Arabidopsis Information Resource (TAIR) maintains a...
The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana.
|
TAIR curator (curator@arabidopsis.org)
TAIR curator (curator@arabidopsis.org)
|
Phoenix Bioinformatics |
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