Acronym | ONTOBIOTOPE |
Visibility | Public |
Description | OntoBiotope is an ontology of microorganism habitats. Its modeling principle and its lexicon reflect the biotope classification used by biologists to describe microorganism isolation sites. OntoBiotope is developed and maintained by the Bibliome group of MaIAGE lab and microbiologists from INRA (French National Institute for Agricultural Research) from all fields of applied microbiology. OntoBiotope classes are used in the Bacteria Biotope reference dataset of BioNLP shared task to annotate the habitats and phenotype entities. |
Status | Production |
Format | OBO |
Contact | Claire Nédellec, claire.nedellec@inra.fr |
Categories | Biodiversity and Ecology, Natural Resources, Earth and Environment |
Groups | GDR SemanDiv, National research institute for agriculture, food and the environment |
URI | http://purl.obolibrary.org/obo/TEMP |
copyright Holder | INRA (http://www.inra.fr/) |
deprecated | false |
designed For Ontology Task | http://omv.ontoware.org/2005/05/ontology#AnnotationTask |
endorsed By | INRA (http://www.inra.fr/) |
endpoint | ![]() |
example Identifier | http://purl.obolibrary.org/obo/OBT_001929 |
funded By | INRA (http://www.inra.fr/) |
Creators | Claire Nédellec |
has Domain | http://data.agroportal.lirmm.fr/categories/NATRES, http://data.bioontology.org/categories/BIODIV |
has Formality Level | http://w3id.org/nkos/nkostype#ontology |
has License | ![]() |
Ontology Syntax | http://purl.obolibrary.org/obo/oboformat/spec.html |
has Prior Version | ONTOBIOTOPE/submissions/4 |
identifier | http://doi.org/10.15454/1.4382640528105164E12 |
is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
keywords | information extraction, corpus annotation, natural language processing, ontology building, biology, genetics |
known Usage | Used by the BioNLP Shared task (Bacteria Biotope task) in 2011, 2013 and 2016 |
Natural Language | |
notes | OntoBiotope is developed and maintained by the Meta-omics of Microbial Ecosystems (MEM) network in which 30 microbiologists from INRA (French National Institute for Agricultural Research) from all fields of applied microbiology participate. |
publisher | INRA (http://www.inra.fr/) |
Release date | 2019-03-19T00:00:00+00:00 |
URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=ONTOBIOTOPE&require_exact_match=true&q= |
used Ontology Engineering Tool | http://oboedit.org/ |
version | BioNLP-OST-2019 |
Version | Released | Uploaded | Downloads |
---|---|---|---|
BioNLP-OST-2019 (Parsed, Indexed, Metrics, Annotator) | 03/19/2019 | 09/25/2019 | OBO | CSV | RDF/XML |
1.2 (Archived) | 07/24/2018 | 07/24/2018 | OBO |
1.2 (Archived) | 07/23/2018 | 07/23/2018 | OBO |
1.2 (Archived) | 06/29/2015 | 06/12/2016 | OBO |
BioNLP-ST 2013 version (Archived) | 06/29/2015 | 06/29/2015 | OBO |
more... |
No views of ONTOBIOTOPE available
Classes | 3,602 |
Individuals | 0 |
Properties | 0 |
Maximum depth | 13 |
Maximum number of children | 35 |
Average number of children | 3 |
Classes with a single child | 423 |
Classes with more than 25 children | 4 |
Classes with no definition | 3,602 |