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Gramene Taxonomy Ontology
Last uploaded:
June 30, 2015
| Acronym | GR-TAX |
| Visibility | Public |
| Description | It is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class or any rank in the classification. Primarily derived from NCBI Taxonomy, the revisions were made as and when/where required in the rankings. The rank of genome types was added by this project. This taxonomy ontology focuses on the Poaceae (Gramineae) family of plant taxonomy only. |
| Status | Alpha |
| Format | OBO |
| Contact | Gramene, gramene@gramene.org |
| Categories | Taxonomic Classifications of Organisms |
| Groups | Agronomic Linked Data |
| deprecated | false |
| endorsed By | |
| endpoint | local:local |
| example Identifier | http://purl.obolibrary.org/obo/GR_tax_079425 |
| has Formality Level | http://w3id.org/nkos/nkostype#taxonomy |
| Ontology Syntax | http://purl.obolibrary.org/obo/oboformat/spec.html |
| identifier | http://purl.obolibrary.org/obo/TEMP |
| is Aligned To | NCBITAXON |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#ApplicationOntology |
| mailing List | http://www.gramene.org/gramene-announce |
| Metadata vocabulary used | local:local |
| Natural Language | |
| notes | The subset category "genome type" was introduced by Gramene, because this information is often used by plant breeders. |
| preferred Namespace Prefix | gramene_taxonomy |
| Release date | 2013-04-26T00:00:00+00:00 |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=GR-TAX&require_exact_match=true&q= |
| use Imports | local:local |
| used Ontology Engineering Tool | OBO-Edit 2.2 |
| version | 2013 |
No views of GR-TAX available
We are still collecting data for GR-TAX
| Classes | 58,598 |
| Individuals | 0 |
| Properties | 1 |
| Maximum depth | 22 |
| Maximum number of children | 381 |
| Average number of children | 5 |
| Classes with a single child | 5,688 |
| Classes with more than 25 children | 448 |
| Classes with no definition | 58,563 |
