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| Number of classes: | 10639 |
|---|---|
| Number of individuals: | 4 |
| Number of properties: | 271 |
| Maximum depth: | 37 |
| Maximum number of children: | 1113 |
| Average number of children: | 4 |
| Classes with a single child: | 1622 |
| Classes with more than 25 children: | 68 |
| Classes with no definition: | 1139 |
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Details
| Acronym | CL |
|---|---|
| Visibility | Public |
| Description | The Cell Ontology is a structured controlled vocabulary for cell types in animals. |
| Status | Production |
| Format | OWL |
| Contact | Alex Diehl, addiehl@buffalo.edu |
| Home Page | https://github.com/obophenotype/cell-ontology |
| Publications Page | http://dx.doi.org/doi:10.1093/database/bav010, http://dx.doi.org/doi:10.1186/s13059-014-0560-6 |
| Documentation Page | http://obofoundry.org/ontology/cl.html |
| Categories | Animal Science and Animal Products |
| Groups | OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group |
Additional Metadata
| URI | http://purl.obolibrary.org/obo/cl.owl |
|---|---|
| Natural Language | |
| version | 2016-11-23 |
| Release date | 2020-05-21T18:00:50+02:00 |
| keywords | eukaryotes, cell biology, anatomy, molecular biology, chemical biology, molecular interactions, pathways and networks, proteins |
| known Usage | One of the main uses of the CL is to describe samples used in transcriptomic and functional genomics studies, such as FANTOM5, ENCODE and LINCS. |
| notes | See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo. |
| Contributors | Ceri van Slyke, Jim Balhoff, Chris Mungall, Terry Meehan, Nicole Vasilevsky, Melissa Haendel, Alexander Diehl, David Osumi-Sutherland, Yvonne Bradford |
| Creators | Chris Mungall, Nicole Vasilevsky, Melissa Haendel, Alan Ruttenberg, Jane Lomax, David Osumi-Sutherland |
| endorsed By | RDA WDI (http://ist.blogs.inra.fr/wdi) |
| has Domain | cells |
| has Formality Level | http://w3id.org/nkos/nkostype#ontology |
| has License |  |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
| used Ontology Engineering Tool | OWL API |
| has Prior Version | CL/submissions/12 |
| deprecated | false |
| Version IRI | http://purl.obolibrary.org/obo/cl/releases/2016-11-23/cl.owl |
| ontology Related To | local:local |
| identifier | http://doi.org/10.5281/zenodo.168254 |
| is Format Of | http://purl.obolibrary.org/obo/cl.obo |
| endpoint |  |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=CL&require_exact_match=true&q= |
| repository | https://github.com/obophenotype/cell-ontology |
| bug Database | https://github.com/obophenotype/cell-ontology/issues |
| example Identifier | http://purl.obolibrary.org/obo/PR_000001889 |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 2016-11-23 (Parsed, Indexed, Metrics, Annotator) | 05/21/2020 | 05/21/2020 | OWL | CSV | RDF/XML |
| 2016-11-23 (Archived) | 03/03/2020 | 03/03/2020 | OWL |
| 2016-11-23 (Archived) | 01/07/2020 | 01/07/2020 | OWL |
| 2016-11-23 (Archived) | 08/12/2019 | 08/12/2019 | OWL |
| 2016-11-23 (Archived) | 07/18/2019 | 07/18/2019 | OWL |
| 2016-11-23 (Archived) | 05/06/2019 | 05/06/2019 | OWL |
| 2016-11-23 (Archived) | 07/11/2018 | 07/11/2018 | OWL |
| 2016-11-23 (Archived) | 12/12/2017 | 12/12/2017 | OWL |
| 2016-11-23 (Archived) | 07/30/2017 | 07/30/2017 | OWL |
| 2016-11-23 (Archived) | 04/16/2017 | 04/16/2017 | OWL |
| 2016-11-23 (Archived) | 01/30/2017 | 01/25/2017 | OWL |
| unknown (Archived) | 01/24/2017 | 01/24/2017 | OWL |
| unknown (Archived) | 01/24/2017 | 01/24/2017 | OWL |
| more... | |||
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Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
|
Agrisemantics Map of Data Standards
|
This Agrisemantics (previously called VEST-AgroPortal) Map of...
This Agrisemantics (previously called VEST-AgroPortal) Map of Data Standards provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).
|
Valeria Pesce (valeria.pesce@fao.org)
Valeria Pesce (valeria.pesce@fao.org)
|
Food & Agriculture Organization |
|
Agronomic Linked Data
|
AgroLD is a RDF knowledge base that consists of data integrated...
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.
|
Pierre Larmande (pierre.larmande@ird.fr)
Pierre Larmande (pierre.larmande@ird.fr)
|
IRD |
|
Monarch Initiative
|
The Monarch Initiative is an integrative data and analytic...
The Monarch Initiative is an integrative data and analytic platform connecting phenotypes to genotypes across species, bridging basic and applied research with semantics-based analysis.
|
https://github.com/monarch-initiative/helpdesk
https://github.com/monarch-initiative/helpdesk
|
https://monarchinitiative.org/about/team |
|
RDA Wheat Interoperability Working Group
|
The Wheat Data Interoperability Working Group aims to provide a...
The Wheat Data Interoperability Working Group aims to provide a common framework for describing, representing linking and publishing Wheat data with respect to open standards.
The RDA WDI group has a specific slice in AgroPortal: http://wheat.agroPortal.lirmm.fr
|
Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)
Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)
|
Research Data Alliance |
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