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Ontologies
CL
Cell Ontology (CL)
OWL
View license
Last submission date February 14, 2025
Summary
Classes
Properties
Instances
Notes
Mappings
Widgets
SPARQL

General information

An ontology of cell types.
Initial created on February 14, 2025. For additional information, contact Alex Diehl (addiehl@buffalo.edu).

Languages

Keywords and classes

eukaryotes
cell biology
anatomy
molecular biology
chemical biology
molecular interactions
pathways and networks
proteins

Categories and subjects

Anim
Animal
Svg Vector Icons : http://www.onlinewebfonts.com/icon
Export all metadata

Metrics

We have not yet calculated metrics for CL

FAIR score
Beta

Total score : 322.0 ( 67.0%)
We could not collect the data from the fairness service

Submissions

Version
Modified Submitted
Actions

2025-02-13

 February 14, 2025
OWL CSV RDF/XML DIFF

2025-01-07

 January 8, 2025
OWL DIFF

2024-09-26

 September 26, 2024
OWL DIFF

2024-08-16

 August 30, 2024
OWL DIFF

2024-07-10

 July 10, 2024
OWL DIFF

2024-05-15

 May 15, 2024
OWL DIFF

2024-04-05

 April 8, 2024
OWL DIFF

2024-02-13

 February 13, 2024
OWL DIFF

2024-01-04

 January 4, 2024
OWL DIFF

2023-12-05

 December 5, 2023
OWL DIFF

2023-10-19

 October 19, 2023
OWL DIFF

2023-09-21

 September 21, 2023
OWL DIFF

2023-08-24

 August 27, 2023
OWL DIFF

2023-07-20

 July 21, 2023
OWL DIFF

2023-06-22

 June 22, 2023
OWL DIFF

2023-04-20

 April 20, 2023
OWL DIFF

2023-03-21

 March 21, 2023
OWL DIFF

2023-02-19

 February 19, 2023
OWL DIFF

2023-02-15

 February 15, 2023
OWL DIFF

2023-01-09

 January 9, 2023
OWL DIFF

2022-01-05

 January 5, 2022
OWL DIFF

2021-01-22

 January 23, 2021
OWL DIFF

2016-11-23

 March 3, 2020
OWL DIFF

2016-11-23

 January 7, 2020
OWL DIFF

2016-11-23

 May 6, 2019
OWL DIFF

2016-11-23

 July 11, 2018
OWL DIFF

unknown

 January 24, 2017
OWL
more...

Identifiers

URI

http://purl.obolibrary.org/obo/cl.owl
http://purl.obolibrary.org/obo/cl.owl

Version IRI

http://purl.obolibrary.org/obo/cl/releases/2025-02-13/cl.owl
http://purl.obolibrary.org/obo/cl/releases/2025-02-13/cl.owl

Other identifier

http://doi.org/10.5281/zenodo.168254
http://doi.org/10.5281/zenodo.168254

AgroPortal URI

https://agroportal.lirmm.fr/ontologies/CL
https://agroportal.lirmm.fr/ontologies/CL

Dates

Creation date

February 14, 2025

Submission date

February 14, 2025

Persons and organizations

Contact

Alex Diehl

Creator

Alan Ruttenberg
David Osumi-Sutherland
Christopher Mungall
Jane Lomax
Nicole Vasilevsky
Melissa Haendel

Contributor

David Osumi-Sutherland
Christopher Mungall
Yvonne M. Bradford
Terrence Meehan
Nicole Vasilevsky
Ceri Van Slyke
Alexander Diehl
James Balhoff
Melissa Haendel

Endorsed by

RDA WDI

Other links

Projects and usage information

Projects using CL

Agrisemantics Map of Data Standards
Agronomic Linked Data
Monarch Initiative
RDA Wheat Interoperability Working Group

Known usage

One of the main uses of the CL is to describe samples used in transcriptomic and functional genomics studies, such as FANTOM5, ENCODE and LINCS.

Methodology and provenance

Created with

OWL API

Community

Repository

https://github.com/obophenotype/cell-ontology
https://github.com/obophenotype/cell-ontology

Bug database

https://github.com/obophenotype/cell-ontology/issues
https://github.com/obophenotype/cell-ontology/issues

Notes

See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo., See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, university at buffalo.

Groups

OBO Foundry
Wheat Data Interoperability working group

Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Identifier pattern

http://purl.obolibrary.org/obo/CL_[0-9]{7}
http://purl.obolibrary.org/obo/CL_[0-9]{7}

Preferred namespace URI

http://purl.obolibrary.org/obo/CL_
http://purl.obolibrary.org/obo/CL_

Preferred namespace prefix

cl

Example of resource

http://purl.obolibrary.org/obo/CL_0000000
http://purl.obolibrary.org/obo/CL_0000000

Visits

Views of CL

No views available for CL.
ID http://purl.obolibrary.org/obo/BFO_0000003
http://purl.obolibrary.org/obo/BFO_0000003
https://agroportal.lirmm.fr/ontologies/CL/BFO_0000003
Preferred name

BFO_0000003

Raw data
No result found
Add comment
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Subject Author Type Created
No notes to display
ID http://purl.obolibrary.org/obo/BSPO_0000096
http://purl.obolibrary.org/obo/BSPO_0000096
https://agroportal.lirmm.fr/ontologies/CL/BSPO_0000096
Type http://www.w3.org/2002/07/owl#ObjectProperty

Raw data
ID http://purl.obolibrary.org/obo/IAO_0000125
http://purl.obolibrary.org/obo/IAO_0000125
https://agroportal.lirmm.fr/ontologies/CL/IAO_0000125
Label pending final vetting
IAO_0000115 All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.

Raw data