Sequence Types and Features Ontology

Last uploaded: November 22, 2021
Preferred Name

polypeptide

Synonyms

protein

Definitions

This term is mapped to MGED. Do not obsolete without consulting MGED ontology. The term 'protein' was merged with 'polypeptide'. Although 'protein' was a sequence_attribute and therefore meant to describe the quality rather than an actual feature, it was being used erroneously. It is replaced by 'peptidyl' as the polymer attribute. A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation.

ID

http://purl.obolibrary.org/obo/SO_0000104

comment

This term is mapped to MGED. Do not obsolete without consulting MGED ontology. The term 'protein' was merged with 'polypeptide'. Although 'protein' was a sequence_attribute and therefore meant to describe the quality rather than an actual feature, it was being used erroneously. It is replaced by 'peptidyl' as the polymer attribute.

database_cross_reference

http://en.wikipedia.org/wiki/Polypeptide

definition

A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation.

derives_from

http://purl.obolibrary.org/obo/SO_0000316

has_alternative_id

SO:0000358

has_exact_synonym

protein

has_obo_namespace

sequence

id

SO:0000104

in_subset

http://purl.obolibrary.org/obo/so#SOFA

label

polypeptide

notation

SO:0000104

prefLabel

polypeptide

subClassOf

http://purl.obolibrary.org/obo/SO_0001411

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Internal mappings

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http://purl.obolibrary.org/obo/PR_000000001 Protein Ontology REST skos:exactmatch
http://semanticscience.org/resource/SIO_010007 Semanticscience Integrated Ontology LOOM
http://semanticscience.org/resource/SIO_010007 Semanticscience Integrated Ontology LOOM
http://semanticscience.org/resource/SIO_010007 Semanticscience Integrated Ontology LOOM
http://semanticscience.org/resource/SIO_010007 Semanticscience Integrated Ontology LOOM
http://semanticscience.org/resource/SIO_010007 Semanticscience Integrated Ontology LOOM
http://semanticscience.org/resource/SIO_010007 Semanticscience Integrated Ontology LOOM
http://semanticscience.org/resource/SIO_010007 Semanticscience Integrated Ontology LOOM
http://edamontology.org/format_1208 EDAM bioinformatics operations, data types, formats, identifiers and topics REST skos:exactmatch
http://semanticscience.org/resource/SIO_010043 Semanticscience Integrated Ontology REST skos:exactmatch
http://semanticscience.org/resource/SIO_010043 Semanticscience Integrated Ontology REST skos:exactmatch
http://semanticscience.org/resource/SIO_010043 Semanticscience Integrated Ontology REST skos:exactmatch
http://semanticscience.org/resource/SIO_010043 Semanticscience Integrated Ontology REST skos:exactmatch
http://semanticscience.org/resource/SIO_010043 Semanticscience Integrated Ontology REST skos:exactmatch
http://semanticscience.org/resource/SIO_010043 Semanticscience Integrated Ontology REST skos:exactmatch
http://semanticscience.org/resource/SIO_010043 Semanticscience Integrated Ontology REST skos:exactmatch
http://purl.obolibrary.org/obo/CHEBI_15841 Plant Trait Ontology LOOM
http://purl.obolibrary.org/obo/CHEBI_15841 Plant Trait Ontology LOOM
http://purl.obolibrary.org/obo/CHEBI_15841 Plant Experimental Conditions Ontology LOOM
http://purl.obolibrary.org/obo/CHEBI_15841 Plant Trait Ontology LOOM
http://purl.obolibrary.org/obo/CHEBI_15841 Cell Ontology LOOM
http://purl.obolibrary.org/obo/CHEBI_15841 Plant Environment Ontology LOOM
http://purl.obolibrary.org/obo/CHEBI_15841 Phenotype And Trait Ontology LOOM
http://purl.obolibrary.org/obo/CHEBI_15841 Phenotype And Trait Ontology LOOM
http://purl.obolibrary.org/obo/CHEBI_15841 FoodOn LOOM
http://purl.obolibrary.org/obo/CHEBI_15841 Plant Experimental Conditions Ontology LOOM

Interportal mappings

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There are currently no interportal mappings for this class.

External mappings

Delete Mapping To Ontology Source Relations
Protein http://www.southgreen.fr/agrold/resource REST AgroLD annotation owl:equivalentclass
Protein http://www.southgreen.fr/agrold/ REST owl:sameas