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Number of classes:	90
Number of individuals:	0
Number of properties:	74
Maximum depth:	3
Maximum number of children:	24
Average number of children:	4
Classes with a single child:	3
Classes with more than 25 children:	0
Classes with no definition:	32

Acronym	SNPO
Visibility	Public
Description	SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels.
Status	Beta
Format	OWL
Contact	Adrien Coulet, adrien.coulet@loria.fr
Home Page	https://members.loria.fr/ACoulet/files/snpontology1.6_description.html
Publications Page	http://hal.inria.fr/inria-00067863/en
Documentation Page
Categories
Groups	Rice Data Interoperability working group

URI	http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl
Natural Language
version	1.6
Release date	2006-08-01T00:00:00+00:00
notes	Consistency checked by Pellet 2.0, version: full 1.6release: 02/03/2017, A domain representation of genomic variations.
Contributors	Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
Creators	Adrien Coulet
has Formality Level	http://w3id.org/nkos/nkostype#ontology
Ontology Syntax	http://www.w3.org/ns/formats/RDF_XML
is Of Type	http://omv.ontoware.org/2005/05/ontology#ApplicationOntology
use Imports	http://purl.org/obo/owl/SO, http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl
has Prior Version	SNPO/submissions/2
deprecated	false
is Aligned To	http://agroportal.lirmm.fr/ontologies/SO
publisher	LORIA (www.loria.fr/)
identifier	http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl
has Format	https://members.loria.fr/ACoulet/files/ontology/snpontology/versionObo/061009_snpontology_lite.obo
endpoint
URI Lookup Endpoint	http://data.agroportal.lirmm.fr/search??ontologies=SNPO&require_exact_match=true&q=
preferred Namespace Uri	http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#
example Identifier	http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#haplotype

Submission	Release Date	Upload Date	Downloads
1.6 (Parsed, Indexed, Metrics, Annotator)	08/01/2006	03/14/2017	OWL \| CSV \| RDF/XML
TODO: Take into account alternative splicing. (Archived)	03/02/2017	03/02/2017	OWL
unknown (Archived)	01/15/2009	06/23/2015	OWL

Project	Description	People	Institution
RDA Wheat Interoperability Working Group	The Wheat Data Interoperability Working Group aims to provide a... The Wheat Data Interoperability Working Group aims to provide a common framework for describing, representing linking and publishing Wheat data with respect to open standards. The RDA WDI group has a specific slice in AgroPortal: http://wheat.agroPortal.lirmm.fr	Esther Dzalé-Yeumo (edzale@versailles.inra.fr), Richard Fulss (r.fulss@cgiar.org) Esther Dzalé-Yeumo (edzale@versailles.inra.fr), Richard Fulss (r.fulss@cgiar.org)	Research Data Allianca
VEST-AgroPortal Map of Standards	This VEST-AgroPortal provides a global map of existing... This VEST-AgroPortal provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).	Valeria Pesce (valeria.pesce@fao.org) Valeria Pesce (valeria.pesce@fao.org)	Food & Agriculture Organization