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| Number of classes: | 90 |
|---|---|
| Number of individuals: | 0 |
| Number of properties: | 74 |
| Maximum depth: | 3 |
| Maximum number of children: | 24 |
| Average number of children: | 4 |
| Classes with a single child: | 3 |
| Classes with more than 25 children: | 0 |
| Classes with no definition: | 32 |
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Details
| Acronym | SNPO |
|---|---|
| Visibility | Public |
| Description | SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels. |
| Status | Beta |
| Format | OWL |
| Contact | Adrien Coulet, adrien.coulet@loria.fr |
| Home Page | https://members.loria.fr/ACoulet/files/snpontology1.6_description.html |
| Publications Page | http://hal.inria.fr/inria-00067863/en |
| Documentation Page | |
| Categories | |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 1.6 (Parsed, Indexed, Metrics, Annotator) | 08/01/2006 | 03/14/2017 | OWL | CSV | RDF/XML |
| TODO: Take into account alternative splicing. (Archived) | 03/02/2017 | 03/02/2017 | OWL |
| unknown (Archived) | 01/15/2009 | 06/23/2015 | OWL |
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| Project | Description | People | Institution |
|---|---|---|---|
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RDA Wheat Interoperability Working Group
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The Wheat Data Interoperability Working Group aims to provide a...
The Wheat Data Interoperability Working Group aims to provide a common framework for describing, representing linking and publishing Wheat data with respect to open standards.
The RDA WDI group has a specific slice in AgroPortal: http://wheat.agroPortal.lirmm.fr
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Esther Dzalé-Yeumo (edzale@versailles.inra.fr), Richard Fulss (r.fulss@cgiar.org)
Esther Dzalé-Yeumo (edzale@versailles.inra.fr), Richard Fulss (r.fulss@cgiar.org)
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Research Data Allianca |
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VEST-AgroPortal Map of Standards
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This VEST-AgroPortal provides a global map of existing...
This VEST-AgroPortal provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture.
The directory is the result of the merging of records from two different sources: the VEST Registry
(a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).
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Valeria Pesce (valeria.pesce@fao.org)
Valeria Pesce (valeria.pesce@fao.org)
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Food & Agriculture Organization |
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