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Number of classes:	314868
Number of individuals:	0
Number of properties:	17
Maximum depth:	15
Maximum number of children:	98508
Average number of children:	6
Classes with a single child:	22151
Classes with more than 25 children:	100
Classes with no definition:	733

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Acronym	PR
Visibility	Public
Description	An ontological representation of protein-related entities. The PRotein Ontology (PRO) formally defines taxon-specific and taxon-neutral protein-related entities in three major areas: proteins related by evolution; proteins produced from a given gene; and protein-containing complexes.
Status	Production
Format	OWL
Contact	Protein Information Resource, pirmail@georgetown.edu Darren Natale, dan5@georgetown.edu
Home Page	http://proconsortium.org/pro/
Publications Page	http://proconsortium.org/pirwww/about/publication.shtml
Documentation Page	http://proconsortium.org/pirwww/support/help.shtml
Categories
Groups	OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group

Additional Metadata

URI	http://purl.obolibrary.org/obo/pr.owl
Natural Language
version	56.0
Release date	2018-05-16T18:03:33+02:00
key Classes	gene, protein, organism, protein_coding_gene
keywords	protein ,amino acids, genes, proteomics, immunology, uniprot knowledgebase
notes	The PRotein Ontology is licensed under CC BY 4.0. Please see http://obofoundry.org/ontology/pr for details., Use reasoner in OBO Edit to see the correct hierarchy.
Contributors	PIR (http://proconsortium.org/pirwww/about/staff.shtml), Cathy H. Wu, Cecilia Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Raja Mazumder, Peter McGarvey, Karen Ross, Baris Suzek, Sona Vasudevan, C.R. Vinayaka, Qinghua Wang, Yuqi M. Wang, Lai-Su L. Yeh, Jian Zhang
Creators	Darren A. Natale
endorsed By	RDA WDI (http://ist.blogs.inra.fr/wdi/)
funded By	NIH, NIGMS, NHGRI, NIAID, NSF, Computercraft Corporation, NCI, US Air Force, NLM
has Formality Level	http://w3id.org/nkos/nkostype#ontology
has License
Ontology Syntax	http://www.w3.org/ns/formats/RDF_XML
is Of Type	http://omv.ontoware.org/2005/05/ontology#DomainOntology
used Ontology Engineering Tool	PRO dB
has Prior Version	PR/submissions/3
deprecated	false
ontology Related To	http://purl.obolibrary.org/obo/doid.owl, http://agroportal.lirmm.fr/ontologies/GO, http://agroportal.lirmm.fr/ontologies/SO
publisher	PRO Consortium (http://proconsortium.org/)
identifier	http://purl.obolibrary.org/obo/pr.owl
abstract	The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates to UniProtKB in that PRO's organism-specific classes of proteins encoded by a specific gene correspond to entities documented in UniProtKB entries. PRO relates to the GO in that PRO's representations of organism-specific protein complexes are subclasses of the organism-agnostic protein complex terms in the GO Cellular Component Ontology. The past few years have seen growth and changes to the PRO, as well as new points of access to the data and new applications of PRO in immunology and proteomics. Here we describe some of these developments.
is Format Of	http://purl.obolibrary.org/obo/pr.owl
has Format	http://purl.obolibrary.org/obo/pr.obo
endpoint	http://pir.georgetown.edu/pro/pro_sparql.shtml
URI Lookup Endpoint	http://data.agroportal.lirmm.fr/search?ontologies=PR&require_exact_match=true&q=
URI Regex Pattern	http://purl.obolibrary.org/obo/PR_
preferred Namespace Uri	http://purl.obolibrary.org/obo/
preferred Namespace Prefix	protein
more Permissions	The PRotein Ontology is licensed under CC BY 4.0. You are free to share (copy and redistribute the material in any medium or format) and adapt (remix, transform, and build upon the material) for any purpose, even commercially. You must give appropriate credit (by using the original ontology IRI for the whole ontology or original term IRIs for individual terms), provide a link to the license, and indicate if any changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
repository	https://sourceforge.net/projects/pro-obo/
example Identifier	http://purl.obolibrary.org/obo/PR_000018263
copyright Holder	PRO Consortium (http://proconsortium.org/)

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Submissions

Submission	Release Date	Upload Date	Downloads
56.0 (Parsed, Indexed, Metrics, Annotator, Error Diff)	05/16/2018	06/07/2018	OWL \| CSV \| RDF/XML
41.0. (Archived)	04/13/2014	06/30/2015	OBO

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Projects Using This Ontology Create new project

Project	Description	People	Institution
Agrisemantics Map of Data Standards	This Agrisemantics (previously called VEST-AgroPortal) Map of... This Agrisemantics (previously called VEST-AgroPortal) Map of Data Standards provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).	Valeria Pesce (valeria.pesce@fao.org) Valeria Pesce (valeria.pesce@fao.org)	Food & Agriculture Organization
RDA Wheat Interoperability Working Group	The Wheat Data Interoperability Working Group aims to provide a... The Wheat Data Interoperability Working Group aims to provide a common framework for describing, representing linking and publishing Wheat data with respect to open standards. The RDA WDI group has a specific slice in AgroPortal: http://wheat.agroPortal.lirmm.fr	Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org) Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)	Research Data Alliance
The Triticeae Toolbox	T3 is the webportal for the data generated by the Triticeae... T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP). T3 contains SNP, phenotypic, and pedigree data from wheat and barley germplasm in the Triticeae CAP.	Clayton Birkett (clb343@cornell.edu) Clayton Birkett (clb343@cornell.edu)	Agricultural Research Service (USDA ARS)