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| Number of classes: | 314868 |
|---|---|
| Number of individuals: | 0 |
| Number of properties: | 17 |
| Maximum depth: | 15 |
| Maximum number of children: | 98508 |
| Average number of children: | 6 |
| Classes with a single child: | 22151 |
| Classes with more than 25 children: | 100 |
| Classes with no definition: | 733 |
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Details
| Acronym | PR |
|---|---|
| Visibility | Public |
| Description | An ontological representation of protein-related entities. The PRotein Ontology (PRO) formally defines taxon-specific and taxon-neutral protein-related entities in three major areas: proteins related by evolution; proteins produced from a given gene; and protein-containing complexes. |
| Status | Production |
| Format | OWL |
| Contact |
Protein Information Resource, pirmail@georgetown.edu Darren Natale, dan5@georgetown.edu |
| Home Page | http://proconsortium.org/pro/ |
| Publications Page | http://proconsortium.org/pirwww/about/publication.shtml |
| Documentation Page | http://proconsortium.org/pirwww/support/help.shtml |
| Categories | |
| Groups | OBO Foundry, Rice Data Interoperability working group, Wheat Data Interoperability working group |
Additional Metadata
| URI | http://purl.obolibrary.org/obo/pr.owl |
|---|---|
| Natural Language | |
| version | 56.0 |
| Release date | 2018-05-16T18:03:33+02:00 |
| key Classes | gene, protein, organism, protein_coding_gene |
| keywords | protein ,amino acids, genes, proteomics, immunology, uniprot knowledgebase |
| notes | The PRotein Ontology is licensed under CC BY 4.0. Please see http://obofoundry.org/ontology/pr for details., Use reasoner in OBO Edit to see the correct hierarchy. |
| Contributors | PIR (http://proconsortium.org/pirwww/about/staff.shtml), Cathy H. Wu, Cecilia Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Raja Mazumder, Peter McGarvey, Karen Ross, Baris Suzek, Sona Vasudevan, C.R. Vinayaka, Qinghua Wang, Yuqi M. Wang, Lai-Su L. Yeh, Jian Zhang |
| Creators | Darren A. Natale |
| endorsed By | RDA WDI (http://ist.blogs.inra.fr/wdi/) |
| funded By | NIH, NIGMS, NHGRI, NIAID, NSF, Computercraft Corporation, NCI, US Air Force, NLM |
| has Formality Level | http://w3id.org/nkos/nkostype#ontology |
| has License |  |
| Ontology Syntax | http://www.w3.org/ns/formats/RDF_XML |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
| used Ontology Engineering Tool | PRO dB |
| has Prior Version | PR/submissions/3 |
| deprecated | false |
| ontology Related To | http://purl.obolibrary.org/obo/doid.owl, http://agroportal.lirmm.fr/ontologies/GO, http://agroportal.lirmm.fr/ontologies/SO |
| publisher | PRO Consortium (http://proconsortium.org/) |
| identifier | http://purl.obolibrary.org/obo/pr.owl |
| abstract | The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates to UniProtKB in that PRO's organism-specific classes of proteins encoded by a specific gene correspond to entities documented in UniProtKB entries. PRO relates to the GO in that PRO's representations of organism-specific protein complexes are subclasses of the organism-agnostic protein complex terms in the GO Cellular Component Ontology. The past few years have seen growth and changes to the PRO, as well as new points of access to the data and new applications of PRO in immunology and proteomics. Here we describe some of these developments. |
| is Format Of | http://purl.obolibrary.org/obo/pr.owl |
| has Format | http://purl.obolibrary.org/obo/pr.obo |
| endpoint | http://pir.georgetown.edu/pro/pro_sparql.shtml |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=PR&require_exact_match=true&q= |
| URI Regex Pattern | http://purl.obolibrary.org/obo/PR_ |
| preferred Namespace Uri | http://purl.obolibrary.org/obo/ |
| preferred Namespace Prefix | protein |
| more Permissions | The PRotein Ontology is licensed under CC BY 4.0. You are free to share (copy and redistribute the material in any medium or format) and adapt (remix, transform, and build upon the material) for any purpose, even commercially. You must give appropriate credit (by using the original ontology IRI for the whole ontology or original term IRIs for individual terms), provide a link to the license, and indicate if any changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. |
| repository | https://sourceforge.net/projects/pro-obo/ |
| example Identifier | http://purl.obolibrary.org/obo/PR_000018263 |
| copyright Holder | PRO Consortium (http://proconsortium.org/) |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 56.0 (Parsed, Indexed, Metrics, Annotator, Error Diff) | 05/16/2018 | 06/07/2018 | OWL | CSV | RDF/XML |
| 56.0 (Archived) | 05/16/2018 | 05/16/2018 | OBO |
| 41.0. (Archived) | 03/16/2018 | 03/16/2018 | OBO |
| 41.0. (Archived) | 04/13/2014 | 06/30/2015 | OBO |
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Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
|
The Triticeae Toolbox
|
T3 is the webportal for the data generated by the Triticeae...
T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP). T3 contains SNP, phenotypic, and pedigree data from wheat and barley germplasm in the Triticeae CAP.
|
Clayton Birkett (clb343@cornell.edu)
Clayton Birkett (clb343@cornell.edu)
|
Agricultural Research Service (USDA ARS) |
|
VEST-AgroPortal Map of Standards
|
This VEST-AgroPortal provides a global map of existing...
This VEST-AgroPortal provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).
|
Valeria Pesce (valeria.pesce@fao.org)
Valeria Pesce (valeria.pesce@fao.org)
|
Food & Agriculture Organization |
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