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National Center for Biotechnology Information (NCBI) Organismal Classification

Last uploaded: May 20, 2020
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Details
Acronym NCBITAXON
Visibility Public
Description The NCBI Taxonomy Database is a curated classification and nomenclature for all of the organisms in the public sequence databases. This currently represents about 10% of the described species of life on the planet.
Status Production
Format UMLS
Contact NCBI information, info@ncbi.nlm.nih.gov
Categories Taxonomic Classifications of Organisms
Groups OBO Foundry, Rice Data Interoperability working group
Additional Metadata
copyright HolderNLM (https://www.nlm.nih.gov/)
deprecatedfalse
endpoint
example Identifierhttp://purl.bioontology.org/ontology/NCBITAXON/201174
has Domainhttp://data.agroportal.lirmm.fr/categories/TAX
has Formality Levelhttp://w3id.org/nkos/nkostype#taxonomy
has Formathttp://purl.obolibrary.org/obo/ncbitaxon.owl
Ontology Syntaxhttp://www.w3.org/ns/formats/Turtle
has Prior VersionNCBITAXON/submissions/4
identifier
is Aligned ToEO, GR-TAX, CL, FOODON, PECO
is Format Ofhttps://www.ncbi.nlm.nih.gov/taxonomy
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
more PermissionsInformation that is created by or for the US government on this site is within the public domain. Public domain information on the National Library of Medicine (NLM) Web pages may be freely distributed and copied. However, it is requested that in any subsequent use of this work, NLM be given appropriate acknowledgment.
Natural Language
publisherNCBI (https://www.ncbi.nlm.nih.gov/)
Release date2019-11-04T00:00:00+00:00
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=NCBITAXON&require_exact_match=true&q=
version2019AB
Submissions
Version Released Uploaded Downloads
2019AB (Parsed, Indexed, Metrics, Annotator) 11/04/2019 05/20/2020 RDF/TTL | CSV
2018AA (Archived) 05/07/2018 05/19/2020 RDF/TTL
2017AB (Uploaded) 11/06/2017 05/18/2020 RDF/TTL
2016AB (Archived) 11/08/2016 05/18/2020 RDF/TTL
2015AA (Archived) 06/09/2015 06/23/2015 RDF/TTL
more...
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Metrics
Classes 1,776,512
Individuals 0
Properties 3
Maximum depth 35
Maximum number of children 42,960
Average number of children 15
Classes with a single child 43,796
Classes with more than 25 children 8,301
Classes with no definition 1,776,512
Visits
includedInDataCatalog
EBI Ontology LookupBioPortalVEST RegistryThe OBO FoundryOntobeeBioSharingAberOWL
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Projects using NCBITAXON

Agrisemantics Map of Data Standards

Agronomic Linked Data

Computational Biology Institute

Monarch Initiative

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