GFVO | Classes | AgroPortal

ID	http://www.biointerchange.org/gfvo#ExternalReference http://www.biointerchange.org/gfvo#ExternalReference https://agroportal.lirmm.fr/ontologies/GFVO/ExternalReference Loading
Preferred name	External Reference
Definitions	A cross-reference to associate an entity to a representation in another database. Encodes for the "Dbxref" attribute in GFF3 and GVF. Can be used to describe the contents of the "source" column in GTF files. Captures the "genome-build" pragma, "source-method", "attribute-method", "phenotype-description", and "phased-genotypes" structured pragmas in GVF. Accounts for the "assembly" and "pedigreeDB" information fields, and "DB", "H2", "H3", "1000G" additional information in VCF.

rdfs:comment	A cross-reference to associate an entity to a representation in another database. Encodes for the "Dbxref" attribute in GFF3 and GVF. Can be used to describe the contents of the "source" column in GTF files. Captures the "genome-build" pragma, "source-method", "attribute-method", "phenotype-description", and "phased-genotypes" structured pragmas in GVF. Accounts for the "assembly" and "pedigreeDB" information fields, and "DB", "H2", "H3", "1000G" additional information in VCF.
rdf:type	http://www.w3.org/2002/07/owl#Class Loading
rdfs:subClassOf	http://www.biointerchange.org/gfvo#InformationContentEntity Loading
rdfs:label	External Reference
rdfs:isDefinedBy	http://samtools.github.io/hts-specs/VCFv4.2.pdf Loading http://sequenceontology.org/resources/gvf.html Loading http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41 Loading http://www.ensembl.org/info/website/upload/gff.html Loading http://samtools.github.io/hts-specs/VCFv4.1.pdf Loading http://sequenceontology.org/resources/gff3.html Loading See more See less

Subject	Author	Type	Created
No notes to display