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| Number of classes: | 102 |
|---|---|
| Number of individuals: | 0 |
| Number of properties: | 33 |
| Maximum depth: | 6 |
| Maximum number of children: | 8 |
| Average number of children: | 2 |
| Classes with a single child: | 13 |
| Classes with more than 25 children: | 0 |
| Classes with no definition: | 0 |
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Details
| Acronym | GFVO |
|---|---|
| Visibility | Public |
| Description | The Genomic Feature and Variation Ontology (GFVO) specifically addresses genomic data as it is regularly shared using the GFF3 (incl. FASTA), GTF, GVF and VCF file formats. GFVO simplifies data integration and enables linking of genomic annotations across datasets through common semantics of genomic types and relations. |
| Status | Production |
| Format | OWL |
| Contact | Joachim Baran, kim@codamono.com |
| Home Page | https://github.com/BioInterchange/Ontologies |
| Publications Page | https://doi.org/10.7717/peerj.933 |
| Documentation Page | https://github.com/BioInterchange/Ontologies |
| Categories | |
| Groups | Rice Data Interoperability working group |
Additional Metadata
| URI | https://www.codamono.com/biointerchange/gfvo# |
|---|---|
| Natural Language | |
| version | 1.0.6 |
| Release date | 2016-10-18T18:03:02+02:00 |
| known Usage | GFVO is presented here for annotating and representing genomic feature and variation dataset contents. |
| Contributors | Begum Durgahee, Stephen Kan (GitHub: Helisquinde), Michel Dumontier, Joachim Baran, Francesco Strozzi, Raoul Bonnal, Karen Eilbeck, Toshiaki Katayama, Chris Mungall, Takatomo Fujisawa, Robert Hoehndorf, CODAMONO, Erick Antezana |
| Creators | Joachim Baran |
| has Formality Level | http://w3id.org/nkos/nkostype#ontology |
| has License | https://creativecommons.org/publicdomain/zero/1.0/ |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
| used Ontology Engineering Tool | OWL API |
| has Prior Version | GFVO/submissions/2 |
| ontology Related To | FALDO, SIO |
| endpoint |  |
| bug Database | https://github.com/BioInterchange/Ontologies/issues |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 1.0.6 (Parsed, Indexed, Metrics, Annotator) | 10/18/2016 | 10/18/2016 | OWL | CSV | RDF/XML |
| 1.0.5 (Archived) | 05/30/2016 | 05/30/2016 | OWL |
| 1.0.3 (Archived) | 06/22/2014 | 06/23/2015 | OWL |
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Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
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Agronomic Linked Data
|
AgroLD is a RDF knowledge base that consists of data integrated...
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.
|
Pierre Larmande (pierre.larmande@ird.fr)
Pierre Larmande (pierre.larmande@ird.fr)
|
IRD |
|
Computational Biology Institute
|
Modeling, processing and analysis of large scale data in biology, health, agronomy and environment.
Modeling, processing and analysis of large scale data in biology, health, agronomy and environment.
|
Pierre Larmande (pierre.larmande@ird.fr)
Pierre Larmande (pierre.larmande@ird.fr)
|
University of Montpellier, CNRS, CIRAD, INRIA, IRD, INRA, SupAgro, INSERM |
|
VEST-AgroPortal Map of Standards
|
This VEST-AgroPortal provides a global map of existing...
This VEST-AgroPortal provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).
|
Valeria Pesce (valeria.pesce@fao.org)
Valeria Pesce (valeria.pesce@fao.org)
|
Food & Agriculture Organization |
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