Genomic Feature and Variation Ontology

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Number of classes:	102
Number of individuals:	0
Number of properties:	33
Maximum depth:	6
Maximum number of children:	8
Average number of children:	2
Classes with a single child:	13
Classes with more than 25 children:	0
Classes with no definition:	0

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BioPortal VEST Registry AberOWL

Details

Acronym	GFVO
Visibility	Public
Description	The Genomic Feature and Variation Ontology (GFVO) specifically addresses genomic data as it is regularly shared using the GFF3 (incl. FASTA), GTF, GVF and VCF file formats. GFVO simplifies data integration and enables linking of genomic annotations across datasets through common semantics of genomic types and relations.
Status	Production
Format	OWL
Contact	Joachim Baran, kim@codamono.com
Home Page	https://github.com/BioInterchange/Ontologies
Publications Page	https://doi.org/10.7717/peerj.933
Documentation Page	https://github.com/BioInterchange/Ontologies
Categories
Groups	Rice Data Interoperability working group

Additional Metadata

URI	https://www.codamono.com/biointerchange/gfvo#
Natural Language
version	1.0.6
Release date	2016-10-18T18:03:02+02:00
known Usage	GFVO is presented here for annotating and representing genomic feature and variation dataset contents.
Contributors	Begum Durgahee, Stephen Kan (GitHub: Helisquinde), Michel Dumontier, Joachim Baran, Francesco Strozzi, Raoul Bonnal, Karen Eilbeck, Toshiaki Katayama, Chris Mungall, Takatomo Fujisawa, Robert Hoehndorf, CODAMONO, Erick Antezana
Creators	Joachim Baran
has Formality Level	http://w3id.org/nkos/nkostype#ontology
has License	https://creativecommons.org/publicdomain/zero/1.0/
is Of Type	http://omv.ontoware.org/2005/05/ontology#DomainOntology
used Ontology Engineering Tool	OWL API
has Prior Version	GFVO/submissions/2
ontology Related To	FALDO, SIO
endpoint
bug Database	https://github.com/BioInterchange/Ontologies/issues

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Submissions

Submission	Release Date	Upload Date	Downloads
1.0.6 (Parsed, Indexed, Metrics, Annotator)	10/18/2016	10/18/2016	OWL \| CSV \| RDF/XML
1.0.5 (Archived)	05/30/2016	05/30/2016	OWL
1.0.3 (Archived)	06/22/2014	06/23/2015	OWL

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Project	Description	People	Institution
Agrisemantics Map of Data Standards	This Agrisemantics (previously called VEST-AgroPortal) Map of... This Agrisemantics (previously called VEST-AgroPortal) Map of Data Standards provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).	Valeria Pesce (valeria.pesce@fao.org) Valeria Pesce (valeria.pesce@fao.org)	Food & Agriculture Organization
Agronomic Linked Data	AgroLD is a RDF knowledge base that consists of data integrated... AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.	Pierre Larmande (pierre.larmande@ird.fr) Pierre Larmande (pierre.larmande@ird.fr)	IRD
Computational Biology Institute	Modeling, processing and analysis of large scale data in biology, health, agronomy and environment. Modeling, processing and analysis of large scale data in biology, health, agronomy and environment.	Pierre Larmande (pierre.larmande@ird.fr) Pierre Larmande (pierre.larmande@ird.fr)	University of Montpellier, CNRS, CIRAD, INRIA, IRD, INRAE, SupAgro, INSERM

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