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Ontologies
FLOPO
Flora Phenotype Ontology (FLOPO)
OWL
Last submission date September 6, 2019

General information

Abstract

We used the Plant Ontology (PO) and the Phenotype And Trait Ontology (PATO) to extract entity-quality relationships from digitized taxon descriptions in Floras, and used a formal ontological approach based on phenotype description patterns and automated reasoning to generate the FLOPO.

Description

The Flora Phenotype Ontology (FLOPO) is an ontology of phenotypes reported in Floras. The original version was developed at the pro-iBiosphere Hackathon in Leiden. This is the pre-classified version of the ontology. The Flora Phenotype Ontology is generated from the Flora Malesiana, Flora Gabon, Flora of Central Africa, and a collection of Kew's African Floras. Every class in the ontology has at least one taxon annotation. The (draft) taxon annotation are available at http://jagannath.pdn.cam.ac.uk/plant/flora/clean-rerun/
Initial created on September 6, 2019. For additional information, contact Robert Hoehndorf (robert.hoehndorf@kaust.edu.sa).

Languages

Keywords and classes

phenotype
biodiversity
flora
botany
morphological traits

Categories and subjects

Biodiv
Eco
Pheno


Metrics

FAIR score
Beta

We could not collect the data from the fairness service

Ontology relations network

View of (bpm:viewOf) ×
Imports(omv:useImports) ×
Has equivalences with(door:isAlignedTo) ×
Generally related to or relies on(door:ontologyRelatedTo) ×
Backward compatible(omv:isBackwardCompatibleWith) ×
Incompatible(omv:isIncompatibleWith) ×
Comes from the same domain(door:comesFromTheSameDomain) ×
Similar to(door:similarTo) ×
Specializes(door:explanationEvolution) ×
Generalizes(voaf:generalizes) ×
Disparate modelling with(door:hasDisparateModelling) ×
Has part (has views)(dct:hasPart) ×
Used by(voaf:usedBy) ×
Translation(schema:workTranslation) ×
Translation of(schema:translationOfWork) ×

Submissions

Version
Modified Submitted
Actions

0.9

May 15, 2016 September 6, 2019

0.9

May 15, 2016 April 23, 2019

unknown

September 22, 2017

Identifiers

URI

http://purl.obolibrary.org/obo/flopo.owl
http://purl.obolibrary.org/obo/flopo.owl
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Other identifier

https://doi.org/10.1186/s13326-016-0107-8
https://doi.org/10.1186/s13326-016-0107-8
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AgroPortal URI

https://agroportal.lirmm.fr/ontologies/FLOPO
https://agroportal.lirmm.fr/ontologies/FLOPO
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Visits

Views of FLOPO

No views available for FLOPO.

ID http://purl.obolibrary.org/obo/PO_0007017
http://purl.obolibrary.org/obo/PO_0007017
https://agroportal.lirmm.fr/ontologies/FLOPO/PO_0007017
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Preferred name

sporophyte senescent stage

Synonyms
sporophyte senescence stage (exact) 10.03-kernel loosening in daytime in oat (related) 9 Senescence in soybean (related) BBCH principal growth stage 9 (related) C senescence in Solanaceae (related) senescence in Arabidopsis (related) 10.03-kernel loosening in daytime in barley (related) 10.03-kernel loosening in daytime in Triticeae (related) 10.04-overripe, straw dead and collapsing in barley (related) 10.03-kernel loosening in daytime in wheat (related) 10.04-overripe, straw dead and collapsing in wheat (related) 10.04-overripe, straw dead and collapsing in oat (related) 10.04-overripe, straw dead and collapsing in Triticeae (related)
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Definitions
The sporophyte senescent stage is often preceded by the sporophyte reproductive stage, and it ends with death of the sporophyte, either as a result of senescence or some other cause. The sporophyte senescent stage may succeed the sporophyte reproductive stage in monocarpic plants that die after reproducing, such as annuals. This stage is distinct from sporophyte dormant stage, in which organs may senesce, but some parts of the plant remain alive. Multicellular organism senescence/aging (GO:0010259) includes loss of functions such as resistance to disease, homeostasis, and fertility, as well processes like cellular senescence, organ senescence, and wear and tear. The POC curators have requested to the GOC that they revise the definition of GO:0010259, to make it more appropriate for plants. A sporophyte development stage (PO:0028002) during which a sporophyte participates in multicellular organism senescence.
Subject Author Type Created
No notes to display
ID http://purl.obolibrary.org/obo/BSPO_0000096
http://purl.obolibrary.org/obo/BSPO_0000096
https://agroportal.lirmm.fr/ontologies/FLOPO/BSPO_0000096
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Type http://www.w3.org/2002/07/owl#ObjectProperty