EDAM bioinformatics operations, data types, formats, identifiers and topics - Genotyping - Classes | LIRMM AgroPortal

EDAM bioinformatics operations, data types, formats, identifiers and topics

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Preferred Name	Genotyping
Definitions	Methods might consider cytogenetic analyses, copy number polymorphism (and calculate copy number calls for copy-number variation(CNV) regions), single nucleotide polymorphism (SNP), , rare copy number variation (CNV) identification, loss of heterozygosity data and so on.
ID	http://edamontology.org/operation_3196
comment	Methods might consider cytogenetic analyses, copy number polymorphism (and calculate copy number calls for copy-number variation(CNV) regions), single nucleotide polymorphism (SNP), , rare copy number variation (CNV) identification, loss of heterozygosity data and so on.
Created in	1.1
hasDefinition	Analyse DNA sequence data to identify differences between the genetic composition (genotype) of an individual compared to other individual's or a reference sequence.
inSubset	http://purl.obolibrary.org/obo/edam#edam http://purl.obolibrary.org/obo/edam#operations
label	Genotyping
prefixIRI	operation_3196
prefLabel	Genotyping
subClassOf	http://edamontology.org/operation_3197

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Internal mappings

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	http://www.ebi.ac.uk/efo/EFO_0000750	Experimental Factor Ontology	LOOM
	http://www.biointerchange.org/gfvo#Genotyping	Genomic Feature and Variation Ontology	LOOM

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