Ontologies
EDAM
EDAM bioinformatics operations, data types, formats, identifiers and topics (EDAM)
OWL
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Last submission date September 24, 2024
Summary
Classes
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Instances
Notes
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General information

EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions, organised into an intuitive hierarchy for convenient use., EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life cycle. Targetting usability by diverse users, the structure of EDAM is relatively simple, divided into 4 main sections: Topic, Operation, Data (incl. Identifier), and Format. See more...
Initial created on September 24, 2024. For additional information, contact Jon Ison (jison@bioinformatics.dtu.dk) and Hervé Ménager (hmenager@pasteur.fr) and Matúš Kalaš (matus.kalas@uib.no) and Edam Developers (edamontology-developers@lists.sourceforge.net).

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Ontology relations network

Submissions

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Identifiers

URI

http://edamontology.org
http://edamontology.org

Version IRI

http://edamontology.org/1.25-20240924T0027Z-unstable(1.26)
http://edamontology.org/1.25-20240924T0027Z-unstable(1.26)

Other identifier

http://dx.doi.org/10.1093/bioinformatics/btt113
http://dx.doi.org/10.1093/bioinformatics/btt113

AgroPortal URI

https://agroportal.lirmm.fr/ontologies/EDAM
https://agroportal.lirmm.fr/ontologies/EDAM

Dates

Creation date

September 24, 2024

Submission date

September 24, 2024

Persons and organizations

Contact

Jon Ison
Hervé Ménager
Matúš Kalaš
EDAM developers

Creator

Matúš Kalaš
Hervé Ménager
Jon Ison

Contributor

Veit Schwämmle

Other links

Projects and usage information

Projects using EDAM

Agrisemantics Map of Data Standards
RDA Wheat Interoperability Working Group

Known usage

EDAM is suitable for large-scale semantic annotations and categorization of diverse bioinformatics resources. EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries.

Methodology and provenance

Created with

OWL API

Community

Repository

https://github.com/edamontology/edamontology
https://github.com/edamontology/edamontology

Bug database

https://github.com/edamontology/edamontology/issues
https://github.com/edamontology/edamontology/issues

Mailing list

http://elixirmail.cbs.dtu.dk/mailman/listinfo/edam
http://elixirmail.cbs.dtu.dk/mailman/listinfo/edam

Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Preferred namespace prefix

edam

Example of resource

http://edamontology.org/topic_3519
http://edamontology.org/topic_3519

Visits

Views of EDAM

No views available for EDAM.