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EDAM bioinformatics operations, data types, formats, identifiers and topics

Last uploaded: June 18, 2020
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Acronym EDAM
Visibility Public
Description EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions, organised into an intuitive hierarchy for convenient use.
Status Production
Format OWL
Contact Jon Ison, jison@bioinformatics.dtu.dk
Hervé Ménager, hmenager@pasteur.fr
Matúš Kalaš, matus.kalas@uib.no
EDAM developers, edamontology-developers@lists.sourceforge.net
Additional Metadata
URIhttp://edamontology.org
bug Databasehttps://github.com/edamontology/edamontology/issues
deprecatedfalse
endpoint
example Identifierhttp://edamontology.org/topic_3519
ContributorsVeit Schwämmle
CreatorsJon Ison, Hervé Ménager, Matúš Kalaš
has Formality Levelhttp://w3id.org/nkos/nkostype#ontology
has LicenseCreative Commons License
Ontology Syntaxapplication/rdf+xml
has Prior VersionEDAM/submissions/12
identifierhttp://edamontology.org
is Of Typehttp://omv.ontoware.org/2005/05/ontology#DomainOntology
known UsageEDAM is suitable for large-scale semantic annotations and categorization of diverse bioinformatics resources. EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries.
mailing Listhttp://elixirmail.cbs.dtu.dk/mailman/listinfo/edam
more PermissionsWe recommend, however, that while EDAM is being actively maintained by its authors, substantial derived work, major modifications (especially conceptual and semantic), and re-definitions of concepts and other content (e.g. additional constraints on EDAM concepts/owl:Class-es within owl:imports meant with universal validity, that would "close" some desired options of the open-world assumption) are consulted with the EDAM core developers beforehand at the time of consideration, and consistent solutions are sought in collaboration.
Natural Language
preferred Namespace Prefixedam
Release date2020-06-18T18:04:29+02:00
repositoryhttps://github.com/edamontology/edamontology
URI Lookup Endpointhttp://data.agroportal.lirmm.fr/search?ontologies=EDAM&require_exact_match=true&q=
used Ontology Engineering ToolOWL API
version1.25
Submissions
Version
Released
Modified
Uploaded
Downloads
1.25 (Parsed, Indexed, Metrics, Annotator) 06/18/2020 06/18/2020 OWL | CSV | RDF/XML | DIFF
1.25 (Archived) 01/14/2020 01/15/2020 OWL | DIFF
1.21 (Archived) 07/17/2019 07/17/2019 OWL | DIFF
1.21 (Archived) 05/13/2019 05/13/2019 OWL | DIFF
1.21 (Archived) 07/07/2018 03/08/2019 OWL | DIFF
1.16 (Archived) 07/31/2018 07/31/2018 OWL | DIFF
1.16 (Archived) 12/31/2017 12/31/2017 OWL | DIFF
1.16 (Archived) 11/01/2017 11/01/2017 OWL | DIFF
1.16 (Archived) 07/06/2017 07/06/2017 OWL | DIFF
1.16 (Archived) 04/29/2017 04/29/2017 OWL | DIFF
1.16 (Archived) 11/02/2016 11/02/2016 OWL | DIFF
1.9 (Archived) 05/30/2016 05/30/2016 OWL | DIFF
1.9 (Archived) 02/02/2015 06/23/2015 OWL
more...
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FAIR Scores beta
Total score : 291.0 ( 60.0% ) details
Metrics
Classes 3,473
Individuals 0
Properties 12
Maximum depth 8
Maximum number of children 1,114
Average number of children 7
Classes with a single child 160
Classes with more than 25 children 15
Classes with no definition 2,807
Visits
includedInDataCatalog
BioSharingOntobeeEBI Ontology LookupVEST RegistryAberOWLBioPortal
Depiction
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