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| Number of classes: | 3421 |
|---|---|
| Number of individuals: | 0 |
| Number of properties: | 12 |
| Maximum depth: | 8 |
| Maximum number of children: | 1115 |
| Average number of children: | 6 |
| Classes with a single child: | 159 |
| Classes with more than 25 children: | 14 |
| Classes with no definition: | 2764 |
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Details
| Acronym | EDAM |
|---|---|
| Visibility | Public |
| Description | EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions, organised into an intuitive hierarchy for convenient use. |
| Status | Production |
| Format | OWL |
| Contact |
Jon Ison, jison@bioinformatics.dtu.dk Hervé Ménager, hmenager@pasteur.fr Matúš Kalaš, matus.kalas@uib.no EDAM developers, edamontology-developers@lists.sourceforge.net |
| Home Page | http://edamontology.org/page |
| Publications Page | http://dx.doi.org/10.1093/bioinformatics/btt113 |
| Documentation Page | https://github.com/edamontology/edamontology |
| Categories | |
| Groups |
Additional Metadata
| URI | http://edamontology.org |
|---|---|
| Natural Language | |
| version | 1.25 |
| Release date | 2020-01-14T00:00:00+00:00 |
| known Usage | EDAM is suitable for large-scale semantic annotations and categorization of diverse bioinformatics resources. EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries. |
| Contributors | Veit Schwämmle |
| Creators | Jon Ison, Hervé Ménager, Matúš Kalaš |
| has Formality Level | http://w3id.org/nkos/nkostype#ontology |
| has License |  |
| Ontology Syntax | application/rdf+xml |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
| used Ontology Engineering Tool | OWL API |
| has Prior Version | EDAM/submissions/11 |
| deprecated | false |
| identifier | http://edamontology.org |
| endpoint |  |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=EDAM&require_exact_match=true&q= |
| more Permissions | We recommend, however, that while EDAM is being actively maintained by its authors, substantial derived work, major modifications (especially conceptual and semantic), and re-definitions of concepts and other content (e.g. additional constraints on EDAM concepts/owl:Class-es within owl:imports meant with universal validity, that would "close" some desired options of the open-world assumption) are consulted with the EDAM core developers beforehand at the time of consideration, and consistent solutions are sought in collaboration. |
| repository | https://github.com/edamontology/edamontology |
| bug Database | https://github.com/edamontology/edamontology/issues |
| mailing List | http://elixirmail.cbs.dtu.dk/mailman/listinfo/edam |
| example Identifier | http://edamontology.org/topic_3519 |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 1.25 (Parsed, Indexed, Metrics, Annotator) | 01/14/2020 | 01/15/2020 | OWL | CSV | RDF/XML |
| 1.21 (Archived) | 07/17/2019 | 07/17/2019 | OWL |
| 1.21 (Archived) | 05/13/2019 | 05/13/2019 | OWL |
| 1.21 (Archived) | 07/07/2018 | 03/08/2019 | OWL |
| 1.16 (Archived) | 07/31/2018 | 07/31/2018 | OWL |
| 1.16 (Archived) | 12/31/2017 | 12/31/2017 | OWL |
| 1.16 (Archived) | 11/01/2017 | 11/01/2017 | OWL |
| 1.16 (Archived) | 07/06/2017 | 07/06/2017 | OWL |
| 1.16 (Archived) | 04/29/2017 | 04/29/2017 | OWL |
| 1.16 (Archived) | 11/02/2016 | 11/02/2016 | OWL |
| 1.9 (Archived) | 05/30/2016 | 05/30/2016 | OWL |
| 1.9 (Archived) | 02/02/2015 | 06/23/2015 | OWL |
| more... | |||
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Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
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Agrisemantics Map of Data Standards
|
This Agrisemantics (previously called VEST-AgroPortal) Map of...
This Agrisemantics (previously called VEST-AgroPortal) Map of Data Standards provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture. The directory is the result of the merging of records from two different sources: the VEST Registry (a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).
|
Valeria Pesce (valeria.pesce@fao.org)
Valeria Pesce (valeria.pesce@fao.org)
|
Food & Agriculture Organization |
|
RDA Wheat Interoperability Working Group
|
The Wheat Data Interoperability Working Group aims to provide a...
The Wheat Data Interoperability Working Group aims to provide a common framework for describing, representing linking and publishing Wheat data with respect to open standards.
The RDA WDI group has a specific slice in AgroPortal: http://wheat.agroPortal.lirmm.fr
|
Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)
Esther Dzalé-Yeumo (edzale@inrae.fr), Richard Fulss (r.fulss@cgiar.org)
|
Research Data Alliance |
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