EDAM bioinformatics operations, data types, formats, identifiers and topics - protein - Classes | LIRMM AgroPortal

EDAM bioinformatics operations, data types, formats, identifiers and topics

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Preferred Name	protein
Definitions	Non-sequence characters may be used for gaps and translation stop.
ID	http://edamontology.org/format_1208
comment	Non-sequence characters may be used for gaps and translation stop.
Created in	beta12orEarlier
hasDefinition	Alphabet for a protein sequence with possible ambiguity, unknown positions and non-sequence characters.
inSubset	http://purl.obolibrary.org/obo/edam#edam http://purl.obolibrary.org/obo/edam#formats
label	protein
prefixIRI	format_1208
prefLabel	protein
seeAlso	http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Amino_acid_sequence
subClassOf	http://edamontology.org/format_2571 http://edamontology.org/format_2330

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Internal mappings

Delete	Mapping To	Ontology	Source	Relations
	http://opendata.inra.fr/resources/BIORAF#protein	Biorefinery	LOOM
	http://opendata.inra.fr/resources/BIORAF#protein	Biorefinery	LOOM
	http://opendata.inra.fr/resources/BIORAF#protein	Biorefinery	LOOM
	http://opendata.inra.fr/resources/BIORAF#protein	Biorefinery	LOOM
	http://purl.obolibrary.org/obo/SO_0000104	Sequence Types and Features Ontology	REST	skos:exactmatch
	http://purl.obolibrary.org/obo/CHEBI_36080	FoodOn	LOOM
	http://purl.obolibrary.org/obo/CHEBI_36080	Plant Trait Ontology	LOOM
	http://purl.obolibrary.org/obo/CHEBI_36080	Plant Experimental Conditions Ontology	LOOM
	http://purl.obolibrary.org/obo/CHEBI_36080	Experimental Factor Ontology	LOOM
	http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#protein	Single-Nucleotide Polymorphism (SNP) Ontology	LOOM
	http://purl.obolibrary.org/obo/PR_000000001	Cell Ontology	LOOM
	http://purl.obolibrary.org/obo/PR_000000001	Protein Ontology	LOOM
	http://purl.obolibrary.org/obo/PR_000000001	Biological Collections Ontology	LOOM
	http://purl.obolibrary.org/obo/PR_000000001	Biological Collections Ontology	LOOM
	http://semanticscience.org/resource/SIO_010043	Semanticscience Integrated Ontology	LOOM
	http://purl.obolibrary.org/obo/TP_0000129	Thesaurus for Animal Physiology and Livestock Systems	LOOM
	http://purl.obolibrary.org/obo/VariO_0277	Variation Ontology	LOOM

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External mappings

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