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| Number of classes: | 144 |
|---|---|
| Number of individuals: | 26 |
| Number of properties: | 78 |
| Maximum depth: | 3 |
| Maximum number of children: | 18 |
| Average number of children: | 3 |
| Classes with a single child: | 11 |
| Classes with more than 25 children: | 0 |
| Classes with no definition: | 134 |
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Details
| Acronym | CDAO |
|---|---|
| Visibility | Public |
| Description | The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character. |
| Status | Production |
| Format | OWL |
| Contact | Jim Balhoff, balhoff@nescent.org |
| Home Page | http://www.evolutionaryontology.org/ |
| Publications Page | http://www.evolutionaryontology.org |
| Documentation Page | https://sourceforge.net/projects/cdao/ |
| Categories | |
| Groups | OBO Foundry |
Additional Metadata
| URI | http://purl.obolibrary.org/obo/cdao.owl |
|---|---|
| Natural Language | |
| version | 2013-02-01 |
| Release date | 2017-06-02T18:00:04+02:00 |
| keywords | comparative analysis; comparative data analysis; evolutionary comparative analysis; evolution; phylogeny; phylogenetics |
| notes | Comparison of two or more biological entities of the same class when the similarities and differences of the entities are treated explicitly as the product of an evolutionary process of descent with modification. |
| Creators | CDAO Team |
| has Domain | comparative analysis; comparative data analysis; evolutionary comparative analysis; evolution; phylogeny; phylogenetics |
| has Formality Level | http://w3id.org/nkos/nkostype#ontology |
| has License | http://creativecommons.org/publicdomain/zero/1.0/ |
| is Of Type | http://omv.ontoware.org/2005/05/ontology#DomainOntology |
| used Ontology Engineering Tool | OWL API |
| use Imports | http://purl.obolibrary.org/obo/iao/ontology-metadata.owl |
| has Prior Version | CDAO/submissions/1 |
| deprecated | false |
| Version IRI | http://purl.obolibrary.org/obo/cdao/2013-02-01/cdao.owl |
| coverage | Comparison of two or more biological entities of the same class when the similarities and differences of the entities are treated explicitly as the product of an evolutionary process of descent with modification. |
| identifier | http://purl.obolibrary.org/obo/cdao.owl |
| endpoint |  |
| URI Lookup Endpoint | http://data.agroportal.lirmm.fr/search?ontologies=CDAO&require_exact_match=true&q= |
| repository | https://sourceforge.net/projects/cdao/ |
| bug Database | https://sourceforge.net/p/cdao/bugs/ |
| mailing List | https://lists.sourceforge.net/lists/listinfo/cdao-discuss |
| example Identifier | http://purl.obolibrary.org/obo/CDAO_0000098 |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 2013-02-01 (Parsed, Indexed, Metrics, Annotator) | 06/02/2017 | 06/02/2017 | OWL | CSV | RDF/XML |
| 2013-02-01 (Archived) | 08/20/2013 | 06/23/2015 | OWL |
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Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
|
VEST-AgroPortal Map of Standards
|
This VEST-AgroPortal provides a global map of existing...
This VEST-AgroPortal provides a global map of existing vocabularies for the exchange of data in the field of food and agriculture.
The directory is the result of the merging of records from two different sources: the VEST Registry
(a registry of vocabularies of all types and all formats) and the AgroPortal (a repository of ontologies).
|
Valeria Pesce (valeria.pesce@fao.org)
Valeria Pesce (valeria.pesce@fao.org)
|
Food & Agriculture Organization |
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