Comparative Data Analysis Ontology

Last uploaded: December 1, 2022

Details

Acronym	CDAO
Visibility	Public
Description	The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character.
Status	Production
Format	OWL
Contact	Jim Balhoff, balhoff@nescent.org

Additional Metadata

URI	http://purl.obolibrary.org/obo/cdao.owl
bug Database	https://sourceforge.net/p/cdao/bugs/
coverage	Comparison of two or more biological entities of the same class when the similarities and differences of the entities are treated explicitly as the product of an evolutionary process of descent with modification.
deprecated	false
endorsed By
endpoint
example Identifier	http://purl.obolibrary.org/obo/CDAO_0000098
Contributors	Lawrence Hunter, James Malone, Bjoern Peters, William Duncan, Barry Smith, Pat Hayes, Gwen Frishkoff, Carlo Torniai, Michel Dumontier, Chris Stoeckert, Matt Brush, Larisa Soldatova, Yongqun (Oliver) He, Mathias Brochhausen, David Osumi-Sutherland, Paolo Ciccarese, Sivaram Arabandi, Philippe Rocca-Serra, James A. Overton, Randy Dipert, Jennifer Fostel, Christian A. Boelling, Chris Mungall, Holger Stenzhorn, Werner Ceusters, Jonathan Rees, Darren Natale, Albert Goldfain, Satya Sahoo, Alan Ruttenberg, Melanie Courtot, Adam Goldstein, Ron Rudnicki, Jie Zheng, William Hogan
Creators	CDAO Team
has Domain	comparative analysis; comparative data analysis; evolutionary comparative analysis; evolution; phylogeny; phylogenetics
has Formality Level	http://w3id.org/nkos/nkostype#ontology
has License
has Prior Version	CDAO/submissions/3
identifier	http://purl.obolibrary.org/obo/cdao.owl
is Of Type	http://omv.ontoware.org/2005/05/ontology#DomainOntology
keywords	comparative analysis; comparative data analysis; evolutionary comparative analysis; evolution; phylogeny; phylogenetics
mailing List	https://lists.sourceforge.net/lists/listinfo/cdao-discuss
Metadata vocabulary used	local:local
Natural Language
notes	Comparison of two or more biological entities of the same class when the similarities and differences of the entities are treated explicitly as the product of an evolutionary process of descent with modification.
preferred Namespace Prefix	cdao
Release date	2022-12-01T18:07:29+01:00
repository	https://sourceforge.net/projects/cdao/
URI Lookup Endpoint	http://data.agroportal.lirmm.fr/search?ontologies=CDAO&require_exact_match=true&q=
used Ontology Engineering Tool	OWL API
version	2013-02-01
Version IRI	http://purl.obolibrary.org/obo/cdao/2022-11-30/cdao.owl

Version	Released	Uploaded	Downloads
2013-02-01 (Parsed, Indexed, Metrics, Annotator)	12/01/2022	12/01/2022	OWL \| CSV \| RDF/XML \| DIFF
2013-02-01 (Archived)	07/01/2019	07/01/2019	OWL \| DIFF
2013-02-01 (Archived)	06/02/2017	06/02/2017	OWL \| DIFF
2013-02-01 (Archived)	08/20/2013	06/23/2015	OWL

No views of CDAO available

Go to the REST API JSON entry

Total score : 308.0 ( 64.0% ) details

Classes	165
Individuals	26
Properties	78
Maximum depth	4
Maximum number of children	18
Average number of children	3
Classes with a single child	15
Classes with more than 25 children	0
Classes with no definition	139

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