@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix obo_purl: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix metadata_def: <http://data.bioontology.org/metadata/def/> .
@prefix oboinowl_gen: <http://www.geneontology.org/formats/oboInOwl#> .
@prefix ns0: <http://en.wikipedia.org/wiki/> .
@prefix ns1: <http://purl.obolibrary.org/obo/so#> .
obo_purl:SO_0000381
rdfs:subClassOf obo_purl:SO_0000603 .
obo_purl:SO_0000382
rdfs:subClassOf obo_purl:SO_0000603 .
obo_purl:SO_0000603
metadata_def:mappingLoom "groupiiintron" ;
metadata_def:mappingSameURI obo_purl:SO_0000603 ;
metadata_def:prefLabel "group_II_intron" ;
obo_purl:IAO_0000115 "Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." ;
oboinowl_gen:hasDbXref "http://en.wikipedia.org/wiki/Group_II_intron" ;
oboinowl_gen:hasExactSynonym "group II intron" ;
oboinowl_gen:hasOBONamespace "sequence" ;
oboinowl_gen:id "SO:0000603" ;
oboinowl_gen:inSubset ns1:SOFA ;
a owl:Class ;
rdfs:comment "GO:0000373." ;
rdfs:label "group_II_intron" ;
rdfs:subClassOf obo_purl:SO_0000588 ;
skos:notation "SO:0000603" .
obo_purl:SO_0002226
rdfs:subClassOf obo_purl:SO_0000603 .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix obo_purl: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix metadata_def: <http://data.bioontology.org/metadata/def/> .
@prefix oboinowl_gen: <http://www.geneontology.org/formats/oboInOwl#> .
@prefix ns0: <http://en.wikipedia.org/wiki/> .
@prefix ns1: <http://purl.obolibrary.org/obo/so#> .
obo_purl:SO_0000381
rdfs:subClassOf obo_purl:SO_0000603 .
obo_purl:SO_0000382
rdfs:subClassOf obo_purl:SO_0000603 .
obo_purl:SO_0000603
metadata_def:mappingLoom "groupiiintron" ;
metadata_def:mappingSameURI obo_purl:SO_0000603 ;
metadata_def:prefLabel "group_II_intron" ;
obo_purl:IAO_0000115 "Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron to intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny." ;
oboinowl_gen:hasDbXref "http://en.wikipedia.org/wiki/Group_II_intron" ;
oboinowl_gen:hasExactSynonym "group II intron" ;
oboinowl_gen:hasOBONamespace "sequence" ;
oboinowl_gen:id "SO:0000603" ;
oboinowl_gen:inSubset ns1:SOFA ;
a owl:Class ;
rdfs:comment "GO:0000373." ;
rdfs:label "group_II_intron" ;
rdfs:subClassOf obo_purl:SO_0000588 ;
skos:notation "SO:0000603" .
obo_purl:SO_0002226
rdfs:subClassOf obo_purl:SO_0000603 .