URI*
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http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl
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Contact*
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Adrien Coulet (adrien.coulet@loria.fr)
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Submission date
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March 14, 2017
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Deprecated
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false
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Description*
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SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels.
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Example of resource
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http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#haplotype
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Contributor
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Creator
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Formality level
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http://w3id.org/nkos/nkostype#ontology
http://w3id.org/nkos/nkostype#ontology
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Representation language*
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OWL
See more...
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Syntax
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http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
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Prior version
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Homepage
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https://members.loria.fr/ACoulet/files/snpontology1.6_description.html
https://members.loria.fr/ACoulet/files/snpontology1.6_description.html
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Indexed or included in catalog or repository
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https://agroportal.lirmm.fr/
agroportal.lirmm.fr
http://aber-owl.net/ontology/SNPO
http://aber-owl.net/ontology/SNPO
http://bioportal.bioontology.org/ontologies/SNPO
http://bioportal.bioontology.org/ontologies/SNPO
https://lod-cloud.net/dataset/bioportal-snpo
https://lod-cloud.net/dataset/bioportal-snpo
https://vest.agrisemantics.org/content/single-nucleotide-polymorphism-snp-ontology
https://vest.agrisemantics.org/content/single-nucleotide-polymorphism-snp-ontology
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Has equivalences with
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Generic type
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http://omv.ontoware.org/2005/05/ontology#ApplicationOntology
http://omv.ontoware.org/2005/05/ontology#ApplicationOntology
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Missingimports
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http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl
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http://purl.org/obo/owl/SO
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Natural language
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Root of obsolete branch
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http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
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Preferred namespace prefix
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snpo
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Preferred namespace URI
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http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#
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Bibliographic reference
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http://hal.inria.fr/inria-00067863/en
http://hal.inria.fr/inria-00067863/en
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Publisher
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Access URL
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https://data.bioontology.org/ontologies/SNPO/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb
https://data.bioontology.org/ontologies/SNPO/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb
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Creation date*
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August 1, 2006
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Status*
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beta
See more...
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URI Lookup Endpoint
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http://agroportal.lirmm.fr/search??ontologies=SNPO&require_exact_match=true&q=
search??ontologies=SNPO&require_exact_match=true&q=
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Imports
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http://purl.org/obo/owl/SO
http://purl.org/obo/owl/SO
http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl
http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl
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Version information
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version: full 1.6
release: 14/03/2017
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