CSV
XML
JSON
N3
URI*
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl
Contact*
Adrien Coulet (adrien.coulet@loria.fr)
Submission date
March 14, 2017
Deprecated
false See more...
Description*
SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels. See more...
Example of resource
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#haplotype See more...
Contributor
Malika Smaïl-Tabbone
Pascale Benlian
Amedeo Napoli
Marie-Dominique Devignes
Creator
Adrien Coulet
Formality level
http://w3id.org/nkos/nkostype#ontology
http://w3id.org/nkos/nkostype#ontology
Representation language*
OWL See more...
Syntax
http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
Prior version
http://agroportal.lirmm.fr/ontologies/SNPO/submissions/2
2
Homepage
https://members.loria.fr/ACoulet/files/snpontology1.6_description.html
https://members.loria.fr/ACoulet/files/snpontology1.6_description.html
Indexed or included in catalog or repository
https://agroportal.lirmm.fr/
agroportal.lirmm.fr
http://aber-owl.net/ontology/SNPO
http://aber-owl.net/ontology/SNPO
http://bioportal.bioontology.org/ontologies/SNPO
http://bioportal.bioontology.org/ontologies/SNPO
https://lod-cloud.net/dataset/bioportal-snpo
https://lod-cloud.net/dataset/bioportal-snpo
https://vest.agrisemantics.org/content/single-nucleotide-polymorphism-snp-ontology
https://vest.agrisemantics.org/content/single-nucleotide-polymorphism-snp-ontology
Has equivalences with
https://agroportal.lirmm.fr/ontologies/SO
SO
Generic type
http://omv.ontoware.org/2005/05/ontology#ApplicationOntology
http://omv.ontoware.org/2005/05/ontology#ApplicationOntology
Missingimports
http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl See more...
http://purl.org/obo/owl/SO See more...
Natural language
Root of obsolete branch
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
Preferred namespace prefix
snpo See more...
Preferred namespace URI
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#
Bibliographic reference
http://hal.inria.fr/inria-00067863/en
http://hal.inria.fr/inria-00067863/en
Publisher
LORIA (www.loria.fr/)
Access URL
https://data.bioontology.org/ontologies/SNPO/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb
https://data.bioontology.org/ontologies/SNPO/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb
Creation date*
August 1, 2006
Status*
beta See more...
URI Lookup Endpoint
http://agroportal.lirmm.fr/search??ontologies=SNPO&require_exact_match=true&q=
search??ontologies=SNPO&require_exact_match=true&q=
Imports
http://purl.org/obo/owl/SO
http://purl.org/obo/owl/SO
http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl
http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl
Version information
version: full 1.6 release: 14/03/2017 See more...

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