URI*
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http://opendata.inrae.fr/holooligo/
http://opendata.inrae.fr/holooligo/
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Abstract
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MilkOligoThesaurus contains the names, synonyms, abbreviations and abbreviated IUPAC condensed chemical form of 245 MOs collected from selected key articles on mammalian milk analyses. When available each unique MO molecule is linked to its ID from the NCBI PubChem and ChEBI databases. The DOI of sources of the collected information is provided.
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Audience
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Research community in Lifesciences
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Contact*
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Sylvie Combes (sylvie.combes@inrae.fr)
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Coverage
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N/A
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Object creation date property
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http://purl.org/dc/elements/1.1/created
http://purl.org/dc/elements/1.1/created
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Submission date
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October 18, 2023
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Curator
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Sylvie Combes |
Deprecated
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false
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Description*
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This thesaurus gathers milk oligosaccharide synonyms., This dataset is a thesaurus gathering milk oligosaccharide synonyms
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Designed for task (as defined by OMV).
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http://omv.ontoware.org/2005/05/ontology#AnnotationTask
http://omv.ontoware.org/2005/05/ontology#AnnotationTask
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Documentation
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http://dx.doi.org/10.2139/ssrn.4596815
http://dx.doi.org/10.2139/ssrn.4596815
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Example of resource
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http://opendata.inrae.fr/holooligo/oligo_165
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Funded or sponsored by
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INRAE INRAE metaprogramme HoloFLUX |
Contributor
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Sophie Aubin Agnès Girard |
Creator
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Sylvie Combes Christelle Knudsen Mathilde Rumeau |
Subject
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https://data.agroportal.lirmm.fr/categories/ANIMAL, https://data.agroportal.lirmm.fr/categories/NUTRITION
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Formality level
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http://w3id.org/nkos/nkostype#thesaurus
http://w3id.org/nkos/nkostype#thesaurus
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Has format
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https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/BN0FFA&version=1.0
https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/BN0FFA&version=1.0
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License
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Representation language*
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SKOS
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Syntax
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http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
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Homepage
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https://doi.org/10.57745/RA5DAC
https://doi.org/10.57745/RA5DAC
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Other identifier
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https://doi.org/10.57745/RA5DAC
https://doi.org/10.57745/RA5DAC
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Indexed or included in catalog or repository
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https://entrepot.recherche.data.gouv.fr/dataverse/inrae
https://entrepot.recherche.data.gouv.fr/dataverse/inrae
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Has equivalences with
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https://pubchem.ncbi.nlm.nih.gov/
https://pubchem.ncbi.nlm.nih.gov/
https://www.ebi.ac.uk/chebi/
https://www.ebi.ac.uk/chebi/
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Is format of
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https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/GLM8FW&version=1.0
https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/GLM8FW&version=1.0
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Generic type
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http://omv.ontoware.org/2005/05/ontology#Other
http://omv.ontoware.org/2005/05/ontology#Other
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Keywords
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mammals; milk; oligosaccharide; glycan;
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Known usage
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The first purpose of the thesaurus is to be used for text mining: in order to gain knowledge on the role of MOs it is necessary to find, visualize and analyze MO patterns that are scattered in thousands of scientific papers.In order to automatically extract these data from the literature, making a thesaurus available to normalize MO entities is an essential step. Thus, MilkOligoThesaurus contains standardized names and harmonized terminology for different MO structures, ensuring consistency and facilitating data exchange and integration.
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Modification date
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December 22, 2023
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Object modification date property
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http://purl.org/dc/elements/1.1/modified
http://purl.org/dc/elements/1.1/modified
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More permissions
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https://creativecommons.org/licenses/by/4.0/
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Natural language
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Root of obsolete branch
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http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
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Preferred namespace prefix
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ho
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Preferred namespace URI
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http://opendata.inrae.fr/holooligo/
http://opendata.inrae.fr/holooligo/
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Bibliographic reference
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http://dx.doi.org/10.2139/ssrn.4596815
http://dx.doi.org/10.2139/ssrn.4596815
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Creation date*
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July 12, 2023
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Status*
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production
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URI Lookup Endpoint
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http://agroportal.lirmm.fr/search?ontologies=MILKOLIGO&require_exact_match=true&q=
search?ontologies=MILKOLIGO&require_exact_match=true&q=
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Identifier pattern
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http://opendata.inrae.fr/holooligo/oligo_[0-9]+
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Imports
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http://www.w3.org/2004/02/skos/core#
http://www.w3.org/2004/02/skos/core#
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Engineering methodology
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SKOS Play!
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Created with
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other
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Version information
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1.0
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Version IRI
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http://opendata.inrae.fr/holooligo/2.0
http://opendata.inrae.fr/holooligo/2.0
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Was generated by
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Mathilde Rumeau
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