URI*
|
http://opendata.inrae.fr/holooligo/
http://opendata.inrae.fr/holooligo/
|
Abstract
|
MilkOligoThesaurus contains the names, synonyms, abbreviations and abbreviated IUPAC condensed chemical form of 245 MOs collected from selected key articles on mammalian milk analyses. When available each unique MO molecule is linked to its ID from the NCBI PubChem and ChEBI databases. The DOI of sources of the collected information is provided.
See more...
|
Audience
|
Research community in Lifesciences
See more...
|
Competency question
|
- List the most commonly identified MOs by analyzing selected reference scientific articles- Propose a consensus name for the normalization of MOs heterogenous names found in the selected articles and in the chemical databases, or the MOs without names- Index MO synonyms
See more...
|
Contact*
|
Sylvie Combes (sylvie.combes@inrae.fr)
|
Coverage
|
N/A
See more...
|
Object creation date property
|
http://purl.org/dc/elements/1.1/created
http://purl.org/dc/elements/1.1/created
|
Submission date
|
October 18, 2023
|
Curator
|
Sylvie Combes |
Deprecated
|
false
See more...
|
Description*
|
This thesaurus gathers milk oligosaccharide synonyms., This dataset is a thesaurus gathering milk oligosaccharide synonyms
See more...
|
Designed for task (as defined by OMV).
|
http://omv.ontoware.org/2005/05/ontology#AnnotationTask
http://omv.ontoware.org/2005/05/ontology#AnnotationTask
|
Documentation
|
http://dx.doi.org/10.2139/ssrn.4596815
http://dx.doi.org/10.2139/ssrn.4596815
|
Example of resource
|
http://opendata.inrae.fr/holooligo/oligo_165
See more...
|
Funded or sponsored by
|
INRAE metaprogramme HoloFLUX INRAE |
Contributor
|
Sophie Aubin Agnès Girard |
Creator
|
Mathilde Rumeau Sylvie Combes Christelle Knudsen |
Subject
|
https://data.agroportal.lirmm.fr/categories/ANIMAL, https://data.agroportal.lirmm.fr/categories/NUTRITION
See more...
|
Formality level
|
http://w3id.org/nkos/nkostype#thesaurus
http://w3id.org/nkos/nkostype#thesaurus
|
Has format
|
https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/BN0FFA&version=1.0
https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/BN0FFA&version=1.0
|
License
|
|
Representation language*
|
SKOS
See more...
|
Syntax
|
http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
|
Homepage
|
https://doi.org/10.57745/RA5DAC
https://doi.org/10.57745/RA5DAC
|
Other identifier
|
https://doi.org/10.57745/RA5DAC
https://doi.org/10.57745/RA5DAC
|
Indexed or included in catalog or repository
|
https://entrepot.recherche.data.gouv.fr/dataverse/inrae
https://entrepot.recherche.data.gouv.fr/dataverse/inrae
|
Has equivalences with
|
https://pubchem.ncbi.nlm.nih.gov/
https://pubchem.ncbi.nlm.nih.gov/
https://www.ebi.ac.uk/chebi/
https://www.ebi.ac.uk/chebi/
|
Is format of
|
https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/GLM8FW&version=1.0
https://entrepot.recherche.data.gouv.fr/file.xhtml?persistentId=doi:10.57745/GLM8FW&version=1.0
|
Generic type
|
http://omv.ontoware.org/2005/05/ontology#Other
http://omv.ontoware.org/2005/05/ontology#Other
|
Keywords
|
mammals; milk; oligosaccharide; glycan;
See more...
|
Known usage
|
The first purpose of the thesaurus is to be used for text mining: in order to gain knowledge on the role of MOs it is necessary to find, visualize and analyze MO patterns that are scattered in thousands of scientific papers.In order to automatically extract these data from the literature, making a thesaurus available to normalize MO entities is an essential step. Thus, MilkOligoThesaurus contains standardized names and harmonized terminology for different MO structures, ensuring consistency and facilitating data exchange and integration.
See more...
|
Modification date
|
December 22, 2023
|
Object modification date property
|
http://purl.org/dc/elements/1.1/modified
http://purl.org/dc/elements/1.1/modified
|
More permissions
|
https://creativecommons.org/licenses/by/4.0/
See more...
|
Natural language
|
|
Root of obsolete branch
|
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
|
Preferred namespace prefix
|
ho
See more...
|
Preferred namespace URI
|
http://opendata.inrae.fr/holooligo/
http://opendata.inrae.fr/holooligo/
|
Bibliographic reference
|
http://dx.doi.org/10.2139/ssrn.4596815
http://dx.doi.org/10.2139/ssrn.4596815
|
Creation date*
|
July 12, 2023
|
Status*
|
production
See more...
|
URI Lookup Endpoint
|
http://agroportal.lirmm.fr/search?ontologies=MILKOLIGO&require_exact_match=true&q=
search?ontologies=MILKOLIGO&require_exact_match=true&q=
|
Identifier pattern
|
http://opendata.inrae.fr/holooligo/oligo_[0-9]+
See more...
|
Imports
|
http://www.w3.org/2004/02/skos/core#
http://www.w3.org/2004/02/skos/core#
|
Engineering methodology
|
SKOS Play!
See more...
|
Created with
|
other
See more...
|
Version information
|
1.0
See more...
|
Version IRI
|
http://opendata.inrae.fr/holooligo/2.0
http://opendata.inrae.fr/holooligo/2.0
|
Was generated by
|
Mathilde Rumeau
See more...
|
Scroll down to see more