BioportalWebUi

URI*	http://www.purl.org/decide/LiveStockHealthOnto/LHO http://www.purl.org/decide/LiveStockHealthOnto/LHO
Abstract	The Livestock Health Ontology (LHO) is a domain-specific ontology that contains information on the health and well-being of terrestrial livestock and aquaculture species. See more...
Accrual method	manual See more... Automatic See more...
Accrual periodicity	http://purl.org/cld/freq/annual See more...
Accrual policy	Open See more...
Alternative name	LHO See more... LiveStockHealthOnto See more... LiveStockHealthOntology See more... LivestockHealthOntology See more... LivestockHealthOnto See more...
The URL of a media associated to the ontology.	https://youtu.be/QmCeoh69hjg https://youtu.be/QmCeoh69hjg https://decideproject.eu/barometer/ https://decideproject.eu/barometer/
Audience	veterinarians , researchers, stakeholders See more...
Competency question	What was the mortality, or infection, status in livestock species? See more... What pathogens were detected in a (Pig, poultry, and cattle) sample during a diagnostic test? See more... What is the production stage (e.g., weaning, growing, finishing) at which pigs tested positive for Mycoplasma hyopneumoniae? See more... What diseases and pathogen were detected? See more... What is the breed of a pig associated with a particular disease outbreak? See more... Which Local Authorities have the highest salmon biomass production? See more... Which Local Authority has the highest cumulative mortalities over the past year? See more... What is the mortality (in kilograms) recorded at a specific salmon farm in December 2024? See more...
Knowledge representation paradigm	Domain Specific Modeling Paradigm See more...
Contact*	Saba Noor (saba.noor@ugent.be) Miel Hostens (miel.hostens@ugent.be)
Rights holder	Saba Noor
Coverage	the development and application of Livestock Health Ontology (LHO) by integrating AGROVOC thesauruses, specifically designed for cattle, poultry, and pigs and salmon. The aim is to enhance integration and obtain a unified view of the data for analysis and visualization. This approach focuses on resource descriptive framework (RDF) data generation, utilizing SPARQL queries for data analysis, and data visualization to enhance LHO's applications in disease surveillance and early detection. The results are served to multiple data users, and showcased via a visualization tool to provide insights to veterinarians, researchers, and farmers. In the near future, we envision that this tool, or similar ones, capture pathogen trends, provide early warnings, support informed vaccination decisions, and facilitate effective disease control on farms. See more...
Object creation date property	http://purl.org/dc/elements/1.1/created http://purl.org/dc/elements/1.1/created
Submission date	April 29, 2025
Depiction	https://zenodo.org/records/13354890 https://zenodo.org/records/13354890
Deprecated	false See more...
Description*	The Livestock Health Ontology (LHO) contains information on the health and well-being of livestock animal species such as cattle, pigs, and poultry. Furthermore, it represents the explicit structured and standardized framework for specific domain knowledge and data integration of livestock species. During the development process, knowledge can be retrieved from domain experts, and after the retrieving process, the prototype is designed for reasoning and planning of data related to cattle, pigs, and poultry. Moreover, LHO contains information regarding farms Identifications, their samples, geolocation, breed, diagnostic tests, Pathogen identifications, and Pathogen results for specific bacteria such as Histophilus Somni (HS), Mannheimia Haemolytica (MH), Pasteurella Multocida (PM), Bovine Coronavirus (BCV) bacterial mycoplasma and aerobic culture results for the respiratory diseases in cattle. This information is represented as concepts of classes, subclasses, and their relationship in the form of object and data properties. For pigs, it includes farm type, age, weight, pig stages and pathogens like PRRS, SwineInfluenza, and M_Hyponemoniea. In poultry, LHO incorporates farm type, with specific pathogen names such as Infectious Bronchitis (IB), providing a concise overview of health aspects across livestock species. Incorporating pathogen identification results, whether positive or negative, within the Livestock Health Ontology (LHO), not only enhances data organization but also supports projects like DECIDE EU Horizon 2020. By providing a structured framework for analyzing disease emergence and options for diagnostic confirmation, LHO contributes to the development of robust data-driven decision-support tools in livestock health management. See more...
Designed for task (as defined by OMV).	http://omv.ontoware.org/2005/05/ontology#AnnotationTask http://omv.ontoware.org/2005/05/ontology#AnnotationTask http://omv.ontoware.org/2005/05/ontology#IntegrationTask http://omv.ontoware.org/2005/05/ontology#IntegrationTask http://omv.ontoware.org/2005/05/ontology#ConfigurationTask http://omv.ontoware.org/2005/05/ontology#ConfigurationTask http://omv.ontoware.org/2005/05/ontology#MatchingTask http://omv.ontoware.org/2005/05/ontology#MatchingTask http://omv.ontoware.org/2005/05/ontology#QueryFormulationTask http://omv.ontoware.org/2005/05/ontology#QueryFormulationTask
Documentation	https://bioportal.bioontology.org/ontologies/LHO https://bioportal.bioontology.org/ontologies/LHO
Endorsed by	CU UGENT
Example of use	https://github.com/decide-project-eu/LivestockHealthOntology See more... https://decide-project-eu.github.io/case-studies-website/tutorials/ontologies.html See more... https://decide-project-eu.github.io/case-studies-website/case-studies/cattle-barometer.html See more...
Example of resource	http://www.purl.org/decide/LiveStockHealthOnto/LHO#CS22 See more...
Specializes	https://agroportal.lirmm.fr/ontologies/DECIDE DECIDE
Funded or sponsored by	DECIDE
Generalizes	https://agroportal.lirmm.fr/ontologies/AGROVOC AGROVOC https://agroportal.lirmm.fr/ontologies/AHOL AHOL https://agroportal.lirmm.fr/ontologies/DECIDE DECIDE
Contributor	UGENT Saba Noor Miel Hostens
Creator	Saba Noor
Subject	http://aims.fao.org/aos/agrovoc/c_4397 See more... http://aims.fao.org/aos/agrovoc/c_16093 See more... http://aims.fao.org/aos/agrovoc/c_16411 See more... http://aims.fao.org/aos/agrovoc/c_2799 See more... http://aims.fao.org/aos/agrovoc/c_34024 See more... http://aims.fao.org/aos/agrovoc/c_431 See more... http://aims.fao.org/aos/agrovoc/c_8206 See more...
Formality level	http://w3id.org/nkos/nkostype#ontology http://w3id.org/nkos/nkostype#ontology
License	https://creativecommons.org/publicdomain/zero/1.0/
Representation language*	OWL See more...
Syntax	http://www.w3.org/ns/formats/RDF_XML http://www.w3.org/ns/formats/RDF_XML
Has part (has views)	https://agroportal.lirmm.fr/ontologies/DECIDE DECIDE
Homepage	https://github.com/decide-project-eu/LivestockHealthOntologyIntegration-CattlePigPoultryUsecase- https://github.com/decide-project-eu/LivestockHealthOntologyIntegration-CattlePigPoultryUsecase-
Indexed or included in catalog or repository	https://agroportal.lirmm.fr agroportal.lirmm.fr https://bioportal.bioontology.org https://bioportal.bioontology.org https://ontobee.org https://ontobee.org
Generic type	http://omv.ontoware.org/2005/05/ontology#DomainOntology http://omv.ontoware.org/2005/05/ontology#DomainOntology
Key classes	Location See more... Pathogen See more... Disease See more...
Keywords	Disease emergence, Diagnostic tests, Pig health, Livestock disease, Pathogen identification, Poultry health, Cattle health, Salmon health, See more...
Known usage	https://decide-project-eu.github.io/case-studies-website/tutorials/ontologies.html See more... https://decide-project-eu.github.io/case-studies-website/case-studies/cattle-barometer.html See more... https://decide-project-eu.github.io/case-studies-website/case-studies/pig-barometer.html See more... https://decideproject.eu/poultry/ See more...
Mailing list	sabanoor8867@gmail.com See more...
Metadata vocabulary used	http://www.w3.org/2002/07/owl# http://www.w3.org/2002/07/owl# http://schema.org/ http://schema.org/ http://www.w3.org/2000/01/rdf-schema# http://www.w3.org/2000/01/rdf-schema# http://www.w3.org/2004/02/skos/core# http://www.w3.org/2004/02/skos/core# http://www.w3.org/ns/dcat# http://www.w3.org/ns/dcat# http://www.w3.org/ns/sparql-service-description# http://www.w3.org/ns/sparql-service-description#
Missingimports	http://www.purl.org/decide See more...
Modification date	April 28, 2025
Object modification date property	http://purl.org/dc/elements/1.1/modified http://purl.org/dc/elements/1.1/modified
More permissions	Saba Noor See more...
Natural language
Notes	https://www.purl.org/decide/LiveStockHealthOnto/LHO See more... LHO, guided by OBO Foundry principles, integrates domain knowledge and data for livestock health. The ontology covers farms, samples, geolocation, breed, diagnostic tests, and pathogen identification, including bacteria like Histophilus somni, Mannheimia haemolytica, Pasteurella multocida, Bovine coronavirus, bacterial mycoplasma, and aerobic culture results in cattle. For pigs, it includes FarmType, age, weight, and pathogens like PRRS, SI and M_Hyponemoniea. In poultry, LHO incorporates FarmType, with specific pathogen names such as Infectious Bronchitis (IB), providing a concise overview of health aspects across livestock species. See more... LHO, guided by OBO Foundry principles, integrates domain knowledge and data for livestock health. The ontology covers farms, samples, geolocation, breed, diagnostic tests, and pathogen identification, including bacteria like Histophilus somni, Mannheimia haemolytica, Pasteurella multocida, Bovine coronavirus, bacterial mycoplasma, and aerobic culture results in cattle. For pigs, it includes FarmType, age, weight, and pathogens like PRRS, SI and M_Hyponemoniea. In poultry, LHO incorporates FarmType, with specific pathogen names such as Infectious Bronchitis (IB), providing a concise overview of health aspects across terrestrial livestock and aquaculture species. See more...
Root of obsolete branch	http://www.geneontology.org/formats/oboInOwl#ObsoleteClass http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
Preferred namespace prefix	LHO See more...
Preferred namespace URI	https://www.purl.org/decide/LiveStockHealthOnto/LHO# https://www.purl.org/decide/LiveStockHealthOnto/LHO#
Bibliographic reference	https://biblio.ugent.be/publication/01JB4AJ4WCTQK85038GAQEEPFH https://biblio.ugent.be/publication/01JB4AJ4WCTQK85038GAQEEPFH https://biblio.ugent.be/publication/01HZ08G35DJNW77HZP2X1P6H6B https://biblio.ugent.be/publication/01HZ08G35DJNW77HZP2X1P6H6B https://github.com/decide-project-eu/LivestockHealthOntology https://github.com/decide-project-eu/LivestockHealthOntology
Publisher	Saba Noor
Access URL	https://data.bioontology.org/ontologies/LHO/download?apikey=4a5011ea-75fa-4be6-8e89-f45c8c84844e https://data.bioontology.org/ontologies/LHO/download?apikey=4a5011ea-75fa-4be6-8e89-f45c8c84844e
Creation date*	April 29, 2025
Repository	https://github.com/decide-project-eu/LivestockHealthOntologyIntegration-CattlePigPoultryUsecase- https://github.com/decide-project-eu/LivestockHealthOntologyIntegration-CattlePigPoultryUsecase-
Similar to	https://agroportal.lirmm.fr/ontologies/AGROVOC AGROVOC
Source	https://github.com/decide-project-eu/LivestockHealthOntology See more... https://zenodo.org/records/8261126 See more... https://biblio.ugent.be/publication/01JB4AJ4WCTQK85038GAQEEPFH See more... https://biblio.ugent.be/publication/01HZ08G35DJNW77HZP2X1P6H6B See more...
Status*	beta See more...
To do list	Updating Ontology for aquatic species See more...
Translation of	https://agroportal.lirmm.fr/ontologies/AGROVOC AGROVOC
Translator	Saba Noor Miel Hostens
URI Lookup Endpoint	https://agroportal.lirmm.fr/search?ontologies=LHO&require_exact_match=true&q= search?ontologies=LHO&require_exact_match=true&q=
Identifier pattern	http://www\.purl\.org/decide/LiveStockHealthOnto/LHO#Lab1SalmonSample_[0-9]+ See more...
Use guidelines	https://zenodo.org/records/13354890 See more...
Imports	https://bioportal.bioontology.org/ontologies/DECIDE https://bioportal.bioontology.org/ontologies/DECIDE
Engineering methodology	Hybrid Approach See more...
Created with	Protégé See more...
Validity date	April 22, 2025
Version information	V1.3 See more...
Version IRI	http://www.purl.org/decide/LiveStockHealthOnto/LHO/1.3 http://www.purl.org/decide/LiveStockHealthOnto/LHO/1.3
Was generated by	AutoGenerationActivity See more... ManualCurationActivity See more...

Scroll down to see more