URI*
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http://purl.obolibrary.org/obo/flopo.owl
http://purl.obolibrary.org/obo/flopo.owl
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Abstract
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We used the Plant Ontology (PO) and the Phenotype And Trait Ontology (PATO) to extract entity-quality relationships from digitized taxon descriptions in Floras, and used a formal ontological approach based on phenotype description patterns and automated reasoning to generate the FLOPO.
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Bug database
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https://github.com/flora-phenotype-ontology/flopoontology/issues
https://github.com/flora-phenotype-ontology/flopoontology/issues
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Contact*
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Robert Hoehndorf (robert.hoehndorf@kaust.edu.sa)
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Submission date
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September 6, 2019
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Depiction
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http://media.springernature.com/full/springer-static/image/art%3A10.1186%2Fs13326-016-0107-8/MediaObjects/13326_2016_107_Fig2_HTML.gif
http://media.springernature.com/full/springer-static/image/art%3A10.1186%2Fs13326-016-0107-8/MediaObjects/13326_2016_107_Fig2_HTML.gif
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Deprecated
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false
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Description*
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The Flora Phenotype Ontology (FLOPO) is an ontology of phenotypes reported in Floras. The original version was developed at the pro-iBiosphere Hackathon in Leiden. This is the pre-classified version of the ontology. The Flora Phenotype Ontology is generated from the Flora Malesiana, Flora Gabon, Flora of Central Africa, and a collection of Kew's African Floras. Every class in the ontology has at least one taxon annotation. The (draft) taxon annotation are available at http://jagannath.pdn.cam.ac.uk/plant/flora/clean-rerun/
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Documentation
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http://wiki.pro-ibiosphere.eu/wiki/Traits_Task_Group
http://wiki.pro-ibiosphere.eu/wiki/Traits_Task_Group
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Example of resource
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http://purl.obolibrary.org/obo/FLOPO_0000003
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Contributor
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Claus Weiland Thomas Hamann George Gosline Quentin Groom Robert Hoehndorf |
Formality level
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http://w3id.org/nkos/nkostype#ontology
http://w3id.org/nkos/nkostype#ontology
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License
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Representation language*
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OWL
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Syntax
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http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
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Prior version
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Homepage
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https://github.com/flora-phenotype-ontology
https://github.com/flora-phenotype-ontology
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Other identifier
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https://doi.org/10.1186/s13326-016-0107-8
https://doi.org/10.1186/s13326-016-0107-8
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Indexed or included in catalog or repository
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http://aber-owl.net/ontology/FLOPO
http://aber-owl.net/ontology/FLOPO
http://www.ebi.ac.uk/ols/ontologies/flopo
http://www.ebi.ac.uk/ols/ontologies/flopo
http://www.obofoundry.org/ontology/flopo.html
http://www.obofoundry.org/ontology/flopo.html
http://www.ontobee.org/ontology/FLOPO
http://www.ontobee.org/ontology/FLOPO
https://agroportal.lirmm.fr/
agroportal.lirmm.fr
https://bioportal.bioontology.org/ontologies/FLOPO
https://bioportal.bioontology.org/ontologies/FLOPO
https://fairsharing.org/bsg-s000558
https://fairsharing.org/bsg-s000558
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Generic type
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http://omv.ontoware.org/2005/05/ontology#DomainOntology
http://omv.ontoware.org/2005/05/ontology#DomainOntology
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Keywords
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phenotype, biodiversity, flora, botany, morphological traits
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Known usage
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The FLOPO is primarily intended as a framework based on which plant traits can be integrated computationally across all species and higher taxa of flowering plants. Importantly, it is not intended to replace established vocabularies or ontologies, but rather serve as an overarching framework based on which different application- and domain-specific ontologies, thesauri and vocabularies of phenotypes observed in flowering plants can be integrated.
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Modification date
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May 15, 2016
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Natural language
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Preferred namespace prefix
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flopo
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Preferred namespace URI
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http://purl.obolibrary.org/obo/FLOPO_
http://purl.obolibrary.org/obo/FLOPO_
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Access URL
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http://purl.obolibrary.org/obo/flopo.owl
http://purl.obolibrary.org/obo/flopo.owl
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Creation date*
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September 6, 2019
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Repository
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https://github.com/flora-phenotype-ontology/flopoontology/
https://github.com/flora-phenotype-ontology/flopoontology/
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Status*
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beta
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URI Lookup Endpoint
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http://agroportal.lirmm.fr/search?ontologies=FLOPO&require_exact_match=true&q=
search?ontologies=FLOPO&require_exact_match=true&q=
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Identifier pattern
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http://purl.obolibrary.org/obo/FLOPO_[0-9]{7}
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Imports
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http://purl.obolibrary.org/obo/pato.owl
http://purl.obolibrary.org/obo/pato.owl
http://purl.obolibrary.org/obo/po.owl
http://purl.obolibrary.org/obo/po.owl
http://purl.obolibrary.org/obo/po/imports/ncbitaxon_import.owl
http://purl.obolibrary.org/obo/po/imports/ncbitaxon_import.owl
http://purl.obolibrary.org/obo/po/imports/ro_import.owl
http://purl.obolibrary.org/obo/po/imports/ro_import.owl
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Created with
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OWL API
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Version information
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0.9
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