URI*
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http://biohackathon.org/resource/faldo
http://biohackathon.org/resource/faldo
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Bug database
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https://github.com/JervenBolleman/FALDO/issues
https://github.com/JervenBolleman/FALDO/issues
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Contact*
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Jerven Bolleman (jerven.bolleman@isb-sib.ch)
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Submission date
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December 13, 2018
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Depiction
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https://static-content.springer.com/image/art%3A10.1186%2Fs13326-016-0067-z/MediaObjects/13326_2016_67_Fig1_HTML.gif
https://static-content.springer.com/image/art%3A10.1186%2Fs13326-016-0067-z/MediaObjects/13326_2016_67_Fig1_HTML.gif
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Deprecated
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false
See more...
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Description*
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FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources. The aim of this ontology is to describe the position of a sequence region or a feature. It does not aim to describe features or regions itself, but instead depends on resources such as the Sequence Ontology or the UniProt core ontolgy.
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Documentation
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https://github.com/JervenBolleman/FALDO
https://github.com/JervenBolleman/FALDO
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Endorsed by
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RDA WDI |
Example of resource
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http://biohackathon.org/resource/faldo#CollectionOfRegions
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Creator
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Robert Buels Joachim Baran Francesco Strozzi Robert Hoehndorf Toshiaki Katayama Raoul J. P. Bonnal Michel Dumontier Christopher Mungall Jerven T. Bolleman Peter J. A. Cock Takatomo Fujisawa |
Formality level
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http://w3id.org/nkos/nkostype#ontology
http://w3id.org/nkos/nkostype#ontology
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License
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Representation language*
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OWL
See more...
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Syntax
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http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
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Prior version
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|
Homepage
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http://aber-owl.net/ontology/FALDO/#/
http://aber-owl.net/ontology/FALDO/#/
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Indexed or included in catalog or repository
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https://vest.agrisemantics.org/content/feature-annotation-location-description-ontology
https://vest.agrisemantics.org/content/feature-annotation-location-description-ontology
http://aber-owl.net/ontology/FALDO
http://aber-owl.net/ontology/FALDO
https://agroportal.lirmm.fr/
agroportal.lirmm.fr
https://fairsharing.org/bsg-s000692
https://fairsharing.org/bsg-s000692
|
Generic type
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http://omv.ontoware.org/2005/05/ontology#DomainOntology
http://omv.ontoware.org/2005/05/ontology#DomainOntology
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Keywords
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sequence ontology, annotation, data integration, sequence feature
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Known usage
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FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas.
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More permissions
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https://github.com/JervenBolleman/FALDO/blob/master/LICENSE
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Natural language
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|
Preferred namespace prefix
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faldo
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Access URL
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https://raw.githubusercontent.com/JervenBolleman/FALDO/master/faldo.ttl
https://raw.githubusercontent.com/JervenBolleman/FALDO/master/faldo.ttl
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Creation date*
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December 13, 2018
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Repository
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https://github.com/OBF/FALDO
https://github.com/OBF/FALDO
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Status*
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production
See more...
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URI Lookup Endpoint
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http://agroportal.lirmm.fr/search?ontologies=FALDO&require_exact_match=true&q=
search?ontologies=FALDO&require_exact_match=true&q=
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Version information
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Created at the Biohackathon 2012 and 2013
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