URI*
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http://purl.obolibrary.org/obo/peco.owl
http://purl.obolibrary.org/obo/peco.owl
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Bug database
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https://github.com/Planteome/plant-environment-ontology/issues
https://github.com/Planteome/plant-environment-ontology/issues
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Comes from the same domain
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Contact*
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Pankaj Jaiswal (jaiswalp@science.oregonstate.edu) Laurel Cooper (cooperl@science.oregonstate.edu)
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Submission date
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November 11, 2023
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Deprecated
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true
See more...
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Description*
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The Plant Environment Ontology describes the treatments,growing conditions, and/or study types used in various types of plant biology experiments. The subjects of the studies may also include in vitro plant structures (PO:0000004). A plant treatment is the most specific,and may be a component of a plant growing condition, and the plant study type. The broadest classes are the plant study types where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own and it may also involve instances of biotic and abiotic treatments and different growing conditions.
See more...
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Documentation
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http://wiki.plantontology.org/index.php/Plant_Environment_Ontology_Wiki
http://wiki.plantontology.org/index.php/Plant_Environment_Ontology_Wiki
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Endorsed by
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RDA WDI |
Example of resource
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http://purl.obolibrary.org/obo/EO_0007263
See more...
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Subject
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https://data.agroportal.lirmm.fr/categories/PLANT
See more...
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Formality level
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http://w3id.org/nkos/nkostype#ontology
http://w3id.org/nkos/nkostype#ontology
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License
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Representation language*
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OWL
See more...
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Syntax
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http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
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Prior version
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Homepage
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http://planteome.org/
http://planteome.org/
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Indexed or included in catalog or repository
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http://aber-owl.net/ontology/EO
http://aber-owl.net/ontology/EO
http://bioportal.bioontology.org/ontologies/PECO
http://bioportal.bioontology.org/ontologies/PECO
http://www.ebi.ac.uk/ols/ontologies/eo
http://www.ebi.ac.uk/ols/ontologies/eo
http://www.obofoundry.org/ontology/eo.html
http://www.obofoundry.org/ontology/eo.html
http://www.ontobee.org/ontology/EO
http://www.ontobee.org/ontology/EO
https://agroportal.lirmm.fr/
agroportal.lirmm.fr
https://biosharing.org/bsg-s000062
https://biosharing.org/bsg-s000062
https://vest.agrisemantics.org/content/plant-environment-ontology
https://vest.agrisemantics.org/content/plant-environment-ontology
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Is format of
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http://purl.obolibrary.org/obo/eo.obo
http://purl.obolibrary.org/obo/eo.obo
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Generic type
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http://omv.ontoware.org/2005/05/ontology#DomainOntology
http://omv.ontoware.org/2005/05/ontology#DomainOntology
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Logo
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http://wiki.plantontology.org/images/2/2f/PO_logo_wiki.png
http://wiki.plantontology.org/images/2/2f/PO_logo_wiki.png
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Natural language
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Notes
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Note this ontology is replaced by http://agroportal.lirmm.fr/ontologies/PECO.
Migration Guide from EO to PECO
If you are using classes like EO:nnnnnn then you should be able to substitute this for PECO:nnnnnn, as all of the numeric parts of the ID are preserved.
For a more robust mechanism, peco.obo contains alt_ids, and peco.owl contains the equivalent replaced_by assertions, which point from an obsoleted EO class to the corresponding PECO class.
See more...
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Generally related to or relies on
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http://bioportal.bioontology.org/ontologies/CHEBI
http://bioportal.bioontology.org/ontologies/CHEBI
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Preferred namespace prefix
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eo
See more...
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Preferred namespace URI
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http://purl.obolibrary.org/obo/EO_
http://purl.obolibrary.org/obo/EO_
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Bibliographic reference
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http://wiki.plantontology.org/index.php/Category:Publications
http://wiki.plantontology.org/index.php/Category:Publications
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Access URL
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https://data.bioontology.org/ontologies/PECO/download?apikey=4a5011ea-75fa-4be6-8e89-f45c8c84844e
https://data.bioontology.org/ontologies/PECO/download?apikey=4a5011ea-75fa-4be6-8e89-f45c8c84844e
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Creation date*
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November 11, 2023
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Repository
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https://github.com/Planteome/plant-experimental-conditions-ontology
https://github.com/Planteome/plant-experimental-conditions-ontology
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Status*
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retired
See more...
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URI Lookup Endpoint
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http://agroportal.lirmm.fr/search?ontologies=EO&require_exact_match=true&q=
search?ontologies=EO&require_exact_match=true&q=
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Identifier pattern
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http://purl.obolibrary.org/obo/EO_[0-9]{7}
See more...
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Imports
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http://purl.obolibrary.org/obo/peco/imports/chebi_import.owl
http://purl.obolibrary.org/obo/peco/imports/chebi_import.owl
http://purl.obolibrary.org/obo/peco/imports/envo_import.owl
http://purl.obolibrary.org/obo/peco/imports/envo_import.owl
http://purl.obolibrary.org/obo/peco/imports/ncbitaxon_import.owl
http://purl.obolibrary.org/obo/peco/imports/ncbitaxon_import.owl
http://purl.obolibrary.org/obo/peco/imports/ro_import.owl
http://purl.obolibrary.org/obo/peco/imports/ro_import.owl
http://purl.obolibrary.org/obo/peco/patterns/exposure-chebi_pattern.owl
http://purl.obolibrary.org/obo/peco/patterns/exposure-chebi_pattern.owl
http://purl.obolibrary.org/obo/peco/patterns/exposure-chebi_role_pattern.owl
http://purl.obolibrary.org/obo/peco/patterns/exposure-chebi_role_pattern.owl
http://purl.obolibrary.org/obo/peco/patterns/exposure-envo_pattern.owl
http://purl.obolibrary.org/obo/peco/patterns/exposure-envo_pattern.owl
http://purl.obolibrary.org/obo/peco/patterns/exposure-ncbitaxon_pattern.owl
http://purl.obolibrary.org/obo/peco/patterns/exposure-ncbitaxon_pattern.owl
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Created with
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OWL API
See more...
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Version information
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releases/2023-11-10
See more...
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Version IRI
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http://purl.obolibrary.org/obo/peco/releases/2023-11-10/peco.owl
http://purl.obolibrary.org/obo/peco/releases/2023-11-10/peco.owl
|
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